Metagenome-assembled genome: SRR5650062_bin.12_CON... - BioSample

Metagenome-assembled genome: SRR5650062_bin.12_CONCOCT_v1.1_MAG

Organism: uncultured Subdoligranulum sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Subdoligranulum; environmental samples

Attributes

collection date	2013-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Longitudinal Stool Study of patients with IBD and controls. This project combines data from PRISM and STINKI cohorts to characterize the gut microbiome of individuals with IBD and controls over time.
sample name	SRR5650062_bin.12_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085935
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:16Z
INSDC last update	2023-01-03T00:33:16Z
INSDC status	public
Submitter Id	SRR5650062_bin.12_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	90.52
completeness software	CheckM
contamination score	0.86
geographic location (latitude)	42.3632
geographic location (longitude)	-71.0688
metagenomic source	human gut metagenome
sample derived from	SAMN07199859
scientific_name	uncultured Subdoligranulum sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5650062 of study SRP108708.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
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