RUG30186

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Result Filters

Organism: uncultured Bifidobacteriaceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; environmental samples

Attributes

collection date	not collected
broad-scale environmental context	Bos Taurus
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Cattle_1_mag_34
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030295
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:14Z
INSDC status	public
Submitter Id	Cattle_1_mag_34
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	IDBA-UD
binning parameters	-v -m 2000
binning software	Metabat2
common name	uncultured Bifidobacteriaceae bacterium
completeness score	98.33
completeness software	CheckM
contamination score	0
geographic location (latitude)	51.4083
geographic location (longitude)	-0.9478
metagenomic source	Bos taurus
sample derived from	ERS3750156
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach