RUG30369

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Result Filters

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

collection date	not collected
broad-scale environmental context	Ruminant
local-scale environmental context	Rumen
environmental medium	Rumen contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB34458
sample name	Rumen_Coassembly_mag_695
ENA first public	2021-02-12
ENA last update	2021-02-11
ENA-CHECKLIST	ERC000047
External Id	SAMEA8030478
INSDC center alias	THE ROSLIN INSTITUTE
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2021-02-12T17:28:52Z
INSDC last update	2021-02-11T16:06:18Z
INSDC status	public
Submitter Id	Rumen_Coassembly_mag_695
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Megahit
binning parameters	-v -m 2000
binning software	Metabat2
common name	Escherichia coli
completeness score	86.55
completeness software	CheckM
contamination score	1.46
geographic location (latitude)	57.0607
geographic location (longitude)	-3.6066
metagenomic source	Artiodactyla
sample derived from	ERS5055282
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach