Metagenome-assembled genome: agebrurvdF_bin.3.MAG

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Lactobacillus delbrueckii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

collection date	2014-11-12
broad-scale environmental context	human-associated habitat
local-scale environmental context	human skin
environmental medium	skin
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human skin
project name	Skin Microbial Genome Catalogue
sample name	agebrurvdF_bin.3.MAG
ENA first public	2022-06-13
ENA last update	2022-06-13
ENA-CHECKLIST	ERC000047
External Id	SAMEA110088993
INSDC center alias	NIH/NHGRI
INSDC center name	NIH/NHGRI
INSDC first public	2022-06-13T04:18:29Z
INSDC last update	2022-06-13T04:18:29Z
INSDC status	public
Submitter Id	agebrurvdF_bin.3.MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v.3.13.0
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning software	metaWRAP v1.2.1
completeness score	84.44
completeness software	CheckM v1.1.2
contamination score	84.44
geographic location (latitude)	38.984653
geographic location (longitude)	-77.09471
metagenomic source	human skin metagenome
sample derived from	SAMN09715313
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

Description: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR7688462,SRR7688463,SRR7688464,SRR7688465.