Metagenome-assembled genome: SRR15732362_bin.8_met... - BioSample

Metagenome-assembled genome: SRR15732362_bin.8_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA110402587; SRA: ERS12500779

Organism: Lactobacillus delbrueckii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	Pig digestive system
collection date	2020-10-06
environmental medium	Digesta
geographic location	China
investigation type	metagenome-assembled genome
isolation source	pig gut metagenome
project name	The differences of jejunal microorganisms among four pig species were studied by metagenomic sequencing
sample name	SRR15732362_bin.8_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-21
ENA-LAST-UPDATE	2022-07-21
External Id	SAMEA110402587
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-21T20:27:48Z
INSDC last update	2022-07-21T20:27:48Z
INSDC status	public
Submitter Id	SRR15732362_bin.8_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	97.83
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Intestine
metagenomic source	pig gut metagenome
sample derived from	SAMN20953125
sequencing method	Illumina MiSeq
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15732362 of study SRP335897.

BioProject: PRJEB52638
Retrieve all samples from this project

Submission: EBI; 2022-07-22

Accession:: SAMEA110402587
ID:: 29899860

BioProject Nucleotide

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

Links from Nucleotide

Metagenome-assembled genome: SRR15732362_bin.8_metaWRAP_v1.3_MAG

Supplemental Content

Related information

Recent activity