| broad-scale environmental context | Pig digestive system |
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| collection date | 2015-01-01 |
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| environmental medium | Feces |
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| geographic location | France |
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| investigation type | metagenome-assembled genome |
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| isolation source | pig gut metagenome |
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| project name | The question of the presence of phage encoded antibiotic-resistance genes was revisited here by sampling 14 pig fecal samples in various farms, and performing shotgun, deep sequencing on both total microbiota and highly purified viral fractions. The virome assemblies were sufficiently comprehensive to allow in addition the discovery of two new and prevailing viral taxa. |
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| sample name | SRR15057919_bin.2_metaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-07-26 |
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| ENA-LAST-UPDATE | 2022-07-26 |
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| External Id | SAMEA110414352 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-07-26T00:34:23Z |
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| INSDC last update | 2022-07-26T00:34:23Z |
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| INSDC status | public |
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| Submitter Id | SRR15057919_bin.2_metaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 99.22 |
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| completeness software | CheckM |
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| contamination score | 0.0 |
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| geographic location (latitude) | not provided |
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| geographic location (longitude) | not provided |
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| local environmental context | Intestine |
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| metagenomic source | pig gut metagenome |
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| sample derived from | SAMN20056608 |
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| sequencing method | Illumina HiSeq 3000 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii |
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| taxonomic identity marker | multi-marker approach |
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