Metagenome-assembled genome: SRR12081297_bin.98_me... - BioSample

Metagenome-assembled genome: SRR12081297_bin.98_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA110643447; SRA: ERS12741211

Organism: Butyrivibrio fibrisolvens
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Butyrivibrio

Attributes

broad-scale environmental context	Sheep digestive system
collection date	2017-11-27
environmental medium	Rumen content
geographic location	China
investigation type	metagenome-assembled genome
isolation source	sheep gut metagenome
project name	The aim of this study was to investigate how the rumen microbiome and fiber-degrading enzymes of Hu sheep respond to diets containing wheat straw
sample name	SRR12081297_bin.98_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-11
ENA-LAST-UPDATE	2022-08-11
External Id	SAMEA110643447
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-08-11T16:15:16Z
INSDC last update	2022-08-11T16:15:16Z
INSDC status	public
Submitter Id	SRR12081297_bin.98_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	51.58
completeness software	CheckM
contamination score	1.75
geographic location (latitude)	31.14
geographic location (longitude)	118.22
local environmental context	Rumen
metagenomic source	sheep gut metagenome
sample derived from	SAMN15356773
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Butyrivibrio;s__Butyrivibrio fibrisolvens
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12081297 of study SRP268616.

BioProject: PRJEB54748
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Submission: EBI; 2022-08-12

Accession:: SAMEA110643447
ID:: 30277563

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Metagenome-assembled genome: SRR12081297_bin.98_metaWRAP_v1.3_MAG

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