Metagenome-assembled genome: SRR19792995_bin.45_me... - BioSample

Metagenome-assembled genome: SRR19792995_bin.45_metawrap_v1.3_MAG

Identifiers: BioSample: SAMEA110745102; SRA: ERS12842627

Organism: Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	Mouse digestive system
collection date	2021-07-20
environmental medium	cecum
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Effect of ulvan oligosaccharide treatment on the gut microbiota of mice on a high-fat diet
sample name	SRR19792995_bin.45_metawrap_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-25
ENA-LAST-UPDATE	2022-08-25
External Id	SAMEA110745102
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-08-25T20:23:22Z
INSDC last update	2022-08-25T20:23:22Z
INSDC status	public
Submitter Id	SRR19792995_bin.45_metawrap_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	99.22
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Digestive tube
metagenomic source	mouse gut metagenome
sample derived from	SAMN29252934
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR19792995 of study SRP383257.

BioProject: PRJEB54774
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Submission: EBI; 2022-08-26

Accession:: SAMEA110745102
ID:: 30520496

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Metagenome-assembled genome: SRR19792995_bin.45_metawrap_v1.3_MAG

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