Metagenome-assembled genome: SRR19715306_bin.21_me... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Identifiers: BioSample: SAMEA111396754; Sample name: SRR19715306_bin.21_metawrap_v1.3_MAG; SRA: ERS13490677

Organism: Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

project name	The study aimed to investigate the gut microbiome, antibiotic resistance, and mobile genetic element alteration associated with intestinal inflammation in early life exposure to cyanotoxin.
isolation source	mouse gut metagenome
collection date	2020-06-01
geographic location	USA
broad-scale environmental context	mouse digestive system
environmental medium	feces
investigation type	metagenome-assembled genome
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii
sequencing method	Illumina HiSeq 4000
assembly software	metaSPAdes v3.15.3
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
binning software	metawrap v1.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
completeness software	CheckM
completeness score	98.97 %
contamination score	0.0 %
geographic location (latitude)	34.0007 DD
geographic location (longitude)	-81.0348 DD
local environmental context	digestive tube
sample derived from	SAMN28703776
metagenomic source	mouse gut metagenome
taxonomic identity marker	multi-marker approach
ENA-FIRST-PUBLIC	2022-09-26
ENA-LAST-UPDATE	2022-09-26

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR19715306 of study SRP382171.