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Metagenome-assembled genome: Tac401_17_Tac_ce.6_1677235957

Identifiers
BioSample: SAMEA112685135; SRA: ERS14682693
Organism
Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Attributes
broad-scale environmental contextmouse digestive system
collection datenot provided
environmental mediumfeces
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameThe integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs) linked to reconstructed full-length 16S rRNA gene sequences
sample nameTac401_17_Tac_ce.6_1677235957
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-02-27
ENA-LAST-UPDATE2023-02-27
External IdSAMEA112685135
INSDC center aliasHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center nameHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public2023-02-27T16:20:37Z
INSDC last update2023-02-27T16:20:37Z
INSDC statuspublic
Submitter IdTac401_17_Tac_ce.6_1677235957
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes
binning parametersdefault
binning softwaremetabat2
completeness score96.9
completeness softwareCheckM
contamination score1.55
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextmouse gut
metagenomic sourcemouse gut metagenome
sample derived fromSAMEA5689865
scientific_nameLactobacillus johnsonii
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR3357586 of study ERP115625.

BioProject
PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project

Submission
EBI; 2023-02-28
Accession:
SAMEA112685135
ID:
33479323

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