Metagenome-assembled genome: extra-SRR1648444.40_1... - BioSample

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Result Filters

Organism: Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	mouse digestive system
collection date	2011-11-01
environmental medium	feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Gut microbiota of mouse Metagenome
sample name	extra-SRR1648444.40_1677795731
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112724256
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T04:21:58Z
INSDC last update	2023-03-06T04:21:58Z
INSDC status	public
Submitter Id	extra-SRR1648444.40_1677795731
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	59.62
completeness software	CheckM
contamination score	0.14
geographic location (latitude)	32.03
geographic location (longitude)	118.46
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMN03175164
scientific_name	Lactobacillus johnsonii
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR1648444 of study SRP049709.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project