Metagenome-assembled genome: extra-ERR2497915.16_1... - BioSample

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Result Filters

Organism: Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	mouse digestive system
collection date	not provided
environmental medium	feces
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Bacterial and virus like particle (VLP) metagenomics of experimental colitis in mice.
sample name	extra-ERR2497915.16_1677795642
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112724065
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T04:22:06Z
INSDC last update	2023-03-06T04:22:06Z
INSDC status	public
Submitter Id	extra-ERR2497915.16_1677795642
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	79.59
completeness software	CheckM
contamination score	0.21
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMEA1061673
scientific_name	Lactobacillus johnsonii
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR2497915 of study ERP104415.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project