Metagenome-assembled genome: extra-SRR5927704.36_1... - BioSample

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Result Filters

Organism: Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	mouse digestive system
collection date	2011-09-20
environmental medium	feces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Development of Inflammatory Bowel Disease is Linked to a Longitudinal Restructuring of the Gut Metagenome in Mice
sample name	extra-SRR5927704.36_1677798325
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112727328
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T04:22:01Z
INSDC last update	2023-03-06T04:22:01Z
INSDC status	public
Submitter Id	extra-SRR5927704.36_1677798325
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	92.29
completeness software	CheckM
contamination score	3.19
geographic location (latitude)	37.767815
geographic location (longitude)	-122.39415
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMN06921513
scientific_name	Lactobacillus johnsonii
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR5927704 of study SRP115267.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project