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Uncultivated Lactobacillus plantarum UBA4900 genome recovered from SRX691277

Identifiers
BioSample: SAMN06451821; Sample name: Lactobacillus plantarum UBA4900; SRA: SRS2035875
Organism
Lactiplantibacillus plantarum
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationChina: Luzhou
isolateUBA4900
isolation sourcemud
metagenome sourcefermentation metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX691277 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated91.49%
contamination_estimated2.78%
environmental_sampletrue
genome_coverage14.39
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the fermentation metagenome reads: SRR1562002.
Description

Uncultivated genome recovered from an assembly of the SRX691277 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06451821
ID:
6451821

BioProject SRA Nucleotide

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