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Uncultivated Lactobacillus johnsonii UBA1154 genome recovered from SRX688076

Identifiers
BioSample: SAMN06450956; Sample name: Lactobacillus johnsonii UBA1154; SRA: SRS2035594
Organism
Lactobacillus johnsonii
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Package
Microbe; version 1.0
Attributes
collection datenot applicable
geographic locationnot applicable
isolateUBA1154
isolation sourcemurine gut
metagenome sourcegut metagenome
sample typemetagenomic assembly
subsource noteGenome binned from sequencing reads available in SRX688076 metagenome
assembly_methodCLC de novo assembler
assembly_method_version4.4.1
completeness_estimated85.28%
contamination_estimated0.19%
environmental_sampletrue
genome_coverage11.41
mapping_methodBWA (BWA-MEM)
mapping_method_version0.7.12-r1039
metagenomictrue
quality_assessment_methodCheckM
quality_assessment_method_version1.0.6
valueThis BioSample is a metagenomic assembly obtained from the gut metagenome reads: SRR1559582.
Description

Uncultivated genome recovered from an assembly of the SRX688076 metagenome.

BioProject
PRJNA348753 metagenomes
Retrieve all samples from this project

Submission
University of Queensland, Donovan Parks; 2017-02-27
Accession:
SAMN06450956
ID:
6450956

BioProject SRA Nucleotide

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