Conserved Protein Domain Family
CagD

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pfam16567: CagD 
Pathogenicity island component CagD
CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.
Statistics
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PSSM-Id: 293175
Aligned: 2 rows
Threshold Bit Score: 381.702
Created: 24-Mar-2022
Updated: 13-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O25277   3 NNNSNKKLRGFFVKVLLSLVVFSSYGLANDDKEAKKEVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKEVNPDI 82  Helicobacter pylori
O25277   3 NNNSNKKLRGFFVKVLLSLVVFSSYGLANDDKEAKKEVLEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKEVNPDI 82  Helicobacter pylori
O25277  83 IKDEVFDFVIVNRVLKKIKDLKHYDPVIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREIL 162 Helicobacter pylori
O25277  83 IKDEVFDFVIVNRVLKKIKDLKHYDPVIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREIL 162 Helicobacter pylori
O25277 163 CDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL 207 Helicobacter pylori
O25277 163 CDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL 207 Helicobacter pylori
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