3PG4,4H0D,4EY2,3S0Z


Conserved Protein Domain Family
NDM_FIM-like_MBL-B1

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cd16300: NDM_FIM-like_MBL-B1 
Click on image for an interactive view with Cn3D
NDM-1, FIM-1 and related metallo-beta-lactamases, subclass B1; MBL-fold metallo-hydrolase domain
Includes the ISCR-mediated MBLs NDM-1 (NDM (New Delhi metallo-beta-lactamase) and FIM-1 (Florence imipenemase). MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. This subgroup of MBLs belongs to the B1 subclass. B1 enzymes are most active with two zinc ions bound in the active site, and have a broad-spectrum substrate profile.
Statistics
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PSSM-Id: 293858
Aligned: 9 rows
Threshold Bit Score: 352.585
Created: 15-May-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2EY2: Klebsiella pneumonia NDM-1 metallo-beta-lactamase binds methicillin and two zinc ions
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     # #                         #                          # ###    
3PG4_A      2 LVFRQLAPNVWQHTSYLDMpGFGAVASNGLIVRDggRVLVVDTAWTDDQTAQILNWIKQEinLPVALAVVTHAHQDKMGG 81  Klebsiella pneumoniae
4H0D_A     22 LVFRQLAPNVWQHTSYLDMpGFGAVASNGLIVRDggRVLVVDTAWTDDQTAQILNWIKQEinLPVALAVVTHAHQDKMGG 101 Klebsiella pneumoniae
4EY2_A     49 LVFRQLAPNVWQHTSYLDMpGFGAVASNGLIVRDggRVLVVDTAWTDDQTAQILNWIKQEinLPVALAVVTHAHQDKMGG 128 Klebsiella pneumoniae
3S0Z_A      3 LVFRQLAPNVWQHTSYLDMpGFGAVASNGLIVRDggRVLVVDTAWTDDQTAQILNWIKQEinLPVALAVVTHAHQDKMGG 82  Escherichia coli
AGB57443   44 LVFRQLAPNVWQHTSYLDMpGFGAVASNGLIVRDggRVLVVDTAWTDDQTAQILNWIKQEinLPVALAVVTHAHQDKMGG 123 Chryseobacterium i...
ABC63608   41 VSFSQLAEGVWMHTTYLDLmGFGPIPSNGLLVVNgdNTILVDTAWTDEQTEQIVAWASMVlaKPVRAAVVTHAHQDKMGG 120 Erythrobacter lito...
ACT60743   45 VEFVKLGTGVWMHTGYKVVpPWGNIRTNGLIIERgdYSVLVDTAWNDAQTAEIVAWAKDTlqKPIRASIHTHAHSDKMGG 124 Hirschia baltica A...
AFV91534   41 VTFTAITQGVWMHTSMKHMeNWGHVPSNGLIVEKgdFSILVDTAWDDPQTAQIIEWSKDTlkKPIRWAVFTHAHDDKMGG 120 Pseudomonas aerugi...
EMD83674   42 VRVEPLADGVWMHTSYERI-GGAAVPSHGLIVRTgdTVLLVDTGWNDDQTAEILDWADAHd-LTVTEAVLTHAHSDKMGG 119 alpha proteobacter...
Feature 1                            #                                    #                  #
3PG4_A     82 MDALHAAGIATYANALSNQLAPQEgMVAAQHSLTfaangwvepATAPNfgPLKVFYPGPGHTSDNITVGIDGTDIAFGGC 161 Klebsiella pneumoniae
4H0D_A    102 MDALHAAGIATYANALSNQLAPQEgMVAAQHSLTfaangwvepATAPNfgPLKVFYPGPGHTSDNITVGIDGTDIAFGGC 181 Klebsiella pneumoniae
4EY2_A    129 MDALHAAGIATYANALSNQLAPQEgMVAAQHSLTfaangwvepATAPNfgPLKVFYPGPGHTSDNITVGIDGTDIAFGGC 208 Klebsiella pneumoniae
3S0Z_A     83 MDALHAAGIATYANALSNQLAPQEgMVAAQHSLTfaangwvepATAPNfgPLKVFYPGPGHTSDNITVGIDGTDIAFGGC 162 Escherichia coli
AGB57443  124 MDALHAAGIATYANALSNQLAPQEgMVAAQHSLTfaangwvepATAPNfgPLKVFYPGPGHTSDNITVGIDGTDIAFGGC 203 Chryseobacterium i...
ABC63608  121 MAALHGANIATWAHPLSNELAPEEgLVPARNAITfdangwatgEAAQSlaPLRLYYPGGAHTRDNITVGLPELGIAFGGC 200 Erythrobacter lito...
ACT60743  125 MDALHMLGVETFATDLTNRLAIERgLMPAKNVLNise----igSQIEWe-GLTILYPGGGHSEDNIVVNEGVNNILFGGC 199 Hirschia baltica A...
AFV91534  121 VAALRQQGIVTYAAADSNRMAPQNgLTPAEHDLIfds----ehSTSVLh-PLVIFDPGPGHTRDNIVVGLPEQGIVFGGC 195 Pseudomonas aerugi...
EMD83674  120 VPVLKARGVRTFAHNLANEDAPARgLEPAETGLFlnp----gdSSMVWs-GVEVMYPGAGHTRGNLVLGIRGQGIVFGGC 194 alpha proteobacter...
Feature 1       #      ###                             #                 
3PG4_A    162 LIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMAD 220 Klebsiella pneumoniae
4H0D_A    182 LIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMAD 240 Klebsiella pneumoniae
4EY2_A    209 LIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMAD 267 Klebsiella pneumoniae
3S0Z_A    163 LIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMAD 221 Escherichia coli
AGB57443  204 LIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMAD 262 Chryseobacterium indologenes
ABC63608  201 MIKAGDASNLGNLADADTAAYAQSVRNFAAAFPDARTIAMSHSPPEGRKAIERTLDLAE 259 Erythrobacter litoralis HTCC2594
ACT60743  200 MIRPGMTTSLGNIDDANLGYWSKAVENAANAFPDSQIVIPSHGKPAGREILKNTAYIAR 258 Hirschia baltica ATCC 49814
AFV91534  196 LIRPSGSTSLGNTADADLAHWKTAVLAVAQRFAEAQQIIPSHGPMAGRELFELTAQLAE 254 Pseudomonas aeruginosa
EMD83674  195 LIRPGDATDLGNTADADVPEWAASAERVGWRFEDAGTIVPSHGDPGGRDLIAHTVALAK 253 alpha proteobacterium JLT2015

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