Conserved Protein Domain Family
Abi_alpha

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pfam14337: Abi_alpha 
Abortive infection alpha
Enterococci such as Enterococcus faecalis and Enterococcus faecium are part of the normal human gut microbiota. However they can also be a source of nosocomial infections specially in immunocompromised patients. Virulent bacteriophages, i.e., viruses that infect and obligatorily lyse bacteria might provide alternative options for combating them. Yet, bacterial resistance to phage is taking place in similar fashion to antibiotic resistance. This might be, in part due to temperate phages that are stably associated with their host. They compete for their bacterial host, in addition to repressor-dependent immunity against similar phages, some phage express genes conferring resistance to infection by more or less unrelated phages. They can encode abortive infection (Abi) mechanisms that cause an interruption of invasive phage development and a premature death of the infected bacteria. For instance, E. faecalis V583 prophage 6 confers resistance to the virulent phage Idefix infection mainly due to Abia-alpha protein. This Pfam family corresponds to Abi-alpha protein sequences which is mostly found in prophages, arguing that it is essentially a temperate phage weapon to fight against other phages.
Statistics
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PSSM-Id: 433879
Aligned: 25 rows
Threshold Bit Score: 91.679
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012628034  64 RGIQPKK---VPLKTLLPILEGASLESDDENLQAKWSNLLTSAVS---GGSSHPSYPKILSELEHFEARILDYLYlfelk 137 Cyanothece sp. ...
CDC65666      61 EKVPEERlksPDPEIAVPLLQSLTYTAQNETLREMYIALLANSMDiskENVVHPSYVDIIKKMNRLDALLFEKLSktr-- 138
CBL26709      73 KDIPEENlqvPPVKIAGPVLEALRYAYDEEELREMYEEMLAKAMDnrkVHQVHRSYVDAVKQMEPLDAQVLRRIYd---- 148
EIM57259      75 NAIPEESrlePNTHVICTALDNMRFCVEEKELREMFSTLIANSVNaekTEYVHPSFGEIIKQMTPLDATILKEMSt---- 150
Q830F4        68 DSIPVDNrddSKLGFALKTMEDARYQLEDEDMREYFSNLLAGLVDnrkNQDSSPRFSIILSELTTIDANLLKKLYk---- 143 Enterococcus fa...
WP_007746217  67 NTIPEDQlatDKFGMAIKALNDSRFQLGDEGLREMFAKLIATTFDkrkNENLVPLFSSLLSNMSPKEAGFLKKWYektkv 146 Oenococcus kita...
Q03R99        65 TDIPEEYrdsSKVNIVLKAVDDSKFRLDDNEMQEAFARLIANALDkrtNKDFYPSYSDILSNMSYSEALTLKRIYsn--- 141 Lactobacillus b...
Q9A040        83 SKIPQTSlkePVEYILYPAINESEQYLSNETLRNMFARTIASTFNqdkEKDLHSAFVQIIKQMTPLDAQNLLLINqeg-- 160 Streptococcus p...
WP_013107925  71 EKIPANAlkdPNVAIIGPALEASRFHMNEENIREMFANLIVSAMDerkDGQVHHAFVEIIKSLSPLDAKNLEYLSq---- 146 Moraxella catar...
CCY99786      72 ESKNAENivdADPSIFIPSAQAISYNWEKEDIKQLYLNLMASDMDitkKENVHPSFSEVIKQMDSNDVKIFTKIYskivi 151
WP_012628034 138 lvsrkaelnkveqqypGRNNLALRKQKTEEvinsfdiprdcfqlskIGEKLSIKKGIL-------------------RDS 198 Cyanothece sp. ...
CDC65666     139 -------------gyvMAINPRIAIN---------------------GTNKIYTNALPewylgwti---dgydefavSAS 181
CBL26709     149 ----------------YNEVTTSHVRLYKS-----------------GSQQYYLNAMPyhyndilc---dlgdpfqiSAS 192
EIM57259     151 ----------------KRRIPVLVVKCKFEngg-----------eiALTNNLIWNDWGnin--------------rvAAS 189
Q830F4       144 ----------------LSITPTIKVRVQAPngngid----yienliLTQKGIVENNFSd-----------------lSPS 186 Enterococcus fa...
WP_007746217 147 shfnsvvinmvqqnsiGTQFPLLDGILVYPdgsm--------endaLN-------------------------------- 186 Oenococcus kita...
Q03R99       142 ---------------pFSHVPISTKTSSNMdgse--------synlSPRTYLFDNKNDssn--------------qtNIA 184 Lactobacillus b...
Q9A040       161 --------------nnLIANLQIGVHYSKE------------------NLSGTVNKANniylskl-----dyspdiiASS 203 Streptococcus p...
WP_013107925 147 ----------------SGDAPIVNIVKEAS------------------------YGFHmlhqhvflgnrqvldpnliTPS 186 Moraxella catar...
CCY99786     152 ply------vlqknegKGTTPILDYLLTSDfyv-----------niSENKV--------------------------IKS 188
WP_012628034 199 IENLLRLRL-----------------CEHPERVSEIEVLTAASlnrpnrnrlptsaendee-----------------ye 244 Cyanothece sp. ...
CDC65666     182 LIRMSKFGIlelmydr----tiieanYSALRQTTFLEQVldgyknaypq------------------------------- 226
CBL26709     193 ISNLIRLGLlistag-----flkegvAERIEKEPYIQERFGIYnqlqggvt----------------------------- 238
EIM57259     190 LDNLSRLELinirled---hytdeaaYTDLKNETHVKNVIELCgkrcpegg----------------------------- 237
Q830F4       187 LQTLRSYGLidirpsieltqkkhtkiYDDFENSTYFKTLKYNLnsffanssffk-------------------------- 240 Enterococcus fa...
WP_007746217 187 INLLESAGLmvryrgrelkhelfqkqYISAEN--YFKSIKVPQekfmpdc------------------------------ 234 Oenococcus kita...
Q03R99       185 IDLLVHSGLvdvredawltspyftkkYDAFEKLEKASPLasispqr---------------------------------- 230 Lactobacillus b...
Q9A040       204 IDNLTRLGLikvdylh----ypldsnYESIKQTTIYKSLESEIntlnlfktsn--------------------------- 252 Streptococcus p...
WP_013107925 187 IDNLARLKLidvtyte---hlthepvYDPFYHSALYQEKVSELgkelklrrldisklqdltrpveldgkvlnkderteqi 263 Moraxella catar...
CCY99786     189 LNNLERLKLieidddq---yyidekiYNPIESGKEIMKYKAKFldkld-------------------------------- 233
WP_012628034 245 ldveedyivnrvidlnLVRLTSLGMSFMAAC 275 Cyanothece sp. PCC 7425
CDC65666     227 ------qqlkiettdsVVYVNEYGKQFREAC 251
CBL26709     239 --------isvpvgceIISLDSYGRYFVDVC 261
EIM57259     238 ---------elsftqgLIKITDF-------- 251
Q830F4       241 -----dtgfsiisirgSIHVTDLGFLFCSKI 266 Enterococcus faecalis
WP_007746217 235 ---------hlesergYVILTELGKMFTNVl 256 Oenococcus kitaharae
Q03R99       231 ---------kidfkkgVVSLTNFGTSFVKFI 252 Lactobacillus brevis ATCC 367
Q9A040       253 ------tkydikiekgKVSLTDFGKKFISVC 277 Streptococcus pyogenes serotype M1
WP_013107925 264 elinkeleskieiqkgIIKLTAFGKNFLSVC 294 Moraxella catarrhalis
CCY99786     234 ------------itkgMIKKTEFGKDFFDVC 252
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