6J9E,5TW1,4MEX


Conserved Protein Domain Family
RpoA

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COG0202: RpoA 
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DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]
DNA-directed RNA polymerase, alpha subunit/40 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Statistics
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PSSM-Id: 439972
Aligned: 507 rows
Threshold Bit Score: 239.188
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6J9E_A        20 NQ-VLRPrG---PQIEr--LTDNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEIDGVLHEYTTVEGLQEDVL 93 
AHB41772       5 QKlIGAPr----IVVSe--SDERTTKFEVKYLPRGFGHSLGNALRRIILGYSIGAAVTGLKIKGVSHEYHVVDGVLENVI 78 
AKH32785       5 QKyIGFPk----IIVDt--VDEKTTSYDLQYLPRGMGHTLGNAFRRIMLAYDMAASVTGMSIRGVTHEYQVVDGIKESVI 78 
ALM09433      16 QEeIGLPtFs--VTPVt-kGDATHAVFVIGPLPPGYGMTLGNALRRALLSSLPGAAVLSMRVHGAQHEYATVKGVQETIL 92 
WP_012544852   2 EKvFEVAdLgrsVDREsgeL-QRAAKLSVLNLPEGEGITLGNALRRVLLGQIGGTGVLGFRLEGLDHEFMVPEGVVEDGL 80 
WP_012359032   4 LK-FIKP-----FFVEeldEKLTSGKFIFYPLVKGHATSIGNSLRRTLLSSLPGTAIVNVSIEGVEHEFTTISGVYEDVM 77 
WP_014453637   1 ---MWKLeE---VSLEvlkEEGNYGEFKFAPLESGFGLTLGTAIRRILLSSIVGVAPVGIYIDGVIHEFSTIEGVVEDVE 74 
WP_012359032   4 LK-FIKP-----FFVEeldEKLTSGKFIFYPLVKGHATSIGNSLRRTLLSSLPGTAIVNVSIEGVEHEFTTISGVYEDVM 77 
WP_025208725   2 EK-FLKPtFqkiIKVEe-eRTSNVAKFVVKKLERGFGNTIGVALRRTILSSIPGIAPFAISIEGVNHEFQAFADTKEDIV 79 
WP_119725635   5 HNtIGAP-K---ITQKd--INGNTTSFVVGPLPRGYGVTIGNSLRRILLSSIPGTRVTGIKVKGVNHEYSTIPGVKDTVI 78 
6J9E_A        94 DVLLNLKDVAIRMHS-----G-D---S-ATLSLSKQGPGTVTAADIRTDHNVEIINGDHVICHLTK-D-TALNMRLKIER 161
AHB41772      79 TIMLNFKSLRFKFDD-----GiD---AiQWISQRFSGVGIYTAKDIKLPAGVELLNPDVRLFEITDpS-VELNMDIRIEK 149
AKH32785      79 IIMLHVKKLRFLVEG-----DeK---E-ITVSQTFSGVGVYTSDDLKLPAGVEVLNESEYLFEITDpS-QKLTIDFRIEK 148
ALM09433      93 DIGLNLKRLKMRKHG-----K-D---L-EVITLQAKGPKVVTAEDLKVSSDIEVLNKDLPILTVEK-G-GAIDMQITVGK 160
WP_012544852  81 TIGLNLKKVLFKYYG-----D-G---V-KVLYIKAKGPAEIKAADIVPDADVEVFNLDQTILTVST-D-REIYMEIYLTN 148
WP_012359032  78 TIILNLKKIIFKVDD-----E-SndfE-EKLKISLSGPQKITAASFGLPEGVKIINPEAPIATISS-D-INFNMTATIKK 148
WP_014453637  75 QIILNVKKLILSMEA-----I-D---K-TILRFEKTGEGELKASDLIHTSEVTIHNPDLHIATISS-SkGRLSGEIYIRR 143
WP_012359032  78 TIILNLKKIIFKVDD-----E-SndfE-EKLKISLSGPQKITAASFGLPEGVKIINPEAPIATISS-D-INFNMTATIKK 148
WP_025208725  80 EIVLNLKNLIIEVDEnlinvD-E---I-YKFTINQRGE-VVTAGDIEAPIGFKIINSDLVIANMVG-K-AKMNMTIYVAY 151
WP_119725635  79 DIILNIKGLILLKSE-----I-G---V-EWLKLKKSKAGVVLASDIKTPAGVEILNNDLYITEIDRdG-LELDIDIRIEK 147
6J9E_A       162 GFGYQPAAA-Rrr-----pDEEtrtI-GRLMLDASFSPVRRVAYAVEAARVEQR-TDLDKLVIDIETN-GTIDAEEAVRT 232
AHB41772     150 GYGYYSIDF-Lrsrd-kkeDSD---V-NILLIDNEFKLVDLIQYEVEEVIEDFTgSTKDLLVLEVKAGySGVSAKEILMF 223
AKH32785     149 GYGYYSIEF-LrnrqkakeESE---I-DMILIDNDFRVIDSVVYDVEEVIDDVNgSTKDKLIITISSQfPKYSPQKFMAF 223
ALM09433     161 GVGYAPASE-Rnk-----kQNE---P-GLIHIDAIFSPVEKVRFTVETARVGQR-TDLEKLVVDVQTN-GSLSAEEAVQF 228
WP_012544852 149 GVGYRTVED-Nkk----lyQFP---F-RTIYLDTSFSPVRRAEYHVTPAIVDEP-GTFESLELIVYTN-LAVDPVEVIRQ 217
WP_012359032 149 GIGYVSAKD-Nkv----hsENQ---L-GVIPIDSLFTPVVNVAYQVEK-KIG----NKEELTMEITTN-GALLAKEALAT 213
WP_014453637 144 GKGYLLEDAvEkl-----eDFP---Q-TVIPIDANFSPVVKATFRVEPTRFEES-VDFDALIVGVQTK-GNKSPRQCLIE 212
WP_012359032 149 GIGYVSAKD-Nkv----hsENQ---L-GVIPIDSLFTPVVNVAYQVEK-KIG----NKEELTMEITTN-GALLAKEALAT 213
WP_025208725 152 SKGFKTFEE-Nrif----vkeAlggLsNIIAIDSNYSPIERVNIRISDVNPGES-RVFEELTLEVETK-GNILPEKVVAF 224
WP_119725635 148 GVGYLTQEE-Lke-----rEED---V-EVLLVDTNFSPVLNVKYEIEKARFGDM-VNLDSLEMLITTD-GSISPINALKF 215
6J9E_A       233 AADILSDQLSVFGDFTHRDRG---A--------A-K---PA-AsGV-D-PVLLRPIDDLELTVRSANCLKAESIYYIGDL 294
AHB41772     224 AGEILASYAKLFVFDNIYIDRsvlIdmdd---lvqEtarTEh--EV---GVKTMPIDALPLSERTRNALIKNNILYVEDL 295
AKH32785     224 AGEVLSSYAKLFVLDDIYVDRsllAtysd--feldErvgNEgGsHI-E-SIKSTPIDALPLSERTRNALIKNGILYVEDL 299
ALM09433     229 ASQLLKSYFEYFGSTEKVVEPefiAdfsragpqVgE---TG-Md-L-SvKESYTPIEILNFSPRTLNALINAGVGSIEQL 302
WP_012544852 218 AANFLSEEFRKVAEAKEAAAGev---------vV-E----E-Qa-IsD-EKLDASVEMLNLSRAVLTHLEKANINTIRDL 280
WP_012359032 214 AAKILVEHFNVVSELSQQTPN---Vef-----vS-E---RK-PeAH-N-YFLDLEIEQLDLSVRLFNSLKRAGINTVADL 278
WP_014453637 213 TINVLLDYSNAFNKLLNGSKV---Gd-------I-S-----------D-DVKNMKIEELNLPERAYNVLVKNNINTVGDL 269
WP_012359032 214 AAKILVEHFNVVSELSQQTPN---Vef-----vS-E---RK-PeAH-N-YFLDLEIEQLDLSVRLFNSLKRAGINTVADL 278
WP_025208725 225 AGSILKNYFKAFDNLEEVDLT---Kqf-----vE-E---IE-EeEI-D-SHLQMSIENLNLSVRSENALKAAGISTVEEL 289
WP_119725635 216 SGDMLTSYFSIFNEESLQVEGqfiSdvkdlisrEkE---EV-KeEL-E-KETYTPIEVMGLSPRTLNALINGDILSIEKL 289
6J9E_A       295 IQKTEVELLKTPNLGKKSLTEIKEVLAQR---GLALGMKL-ENWP 335
AHB41772     296 EKKKKGELLLMKGVGRKAIDEIVSSLANI---SKSLIG------- 330
AKH32785     300 EKKKKGELLIMKGVGRKAIDEINVALGNL---DKTLAG------- 334
ALM09433     303 TKCTEAALSNFRGFGAKALEEVKQTLAER---GLKLSEESlDs-- 342
WP_012544852 281 VDVLEHN-ESIPGIGAVRLEEIRNKLAAYlegGTEDETQS----- 319
WP_012359032 279 VKLSEREVVKLKSLGRKSFQELKDKFVEY---GLEFNDCL-KEAL 319
WP_014453637 270 IKYSAKDLLDLDKFGTASLKSVEEALSKL---GLKLKE------- 304
WP_012359032 279 VKLSEREVVKLKSLGRKSFQELKDKFVEY---GLEFNDCL-KEAL 319
WP_025208725 290 IDRPVSSLQAIKNLGDKSKNEIIQSIQDL---GLSFKSE------ 325
WP_119725635 290 TKCTETKLSSIKGFGKKAMTEIRTSLGER---GLKLLGD--D--- 326
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