Conserved Protein Domain Family
XynB2

?
COG3507: XynB2 (this model, PSSM-Id:226038 is obsolete and has been replaced by 442730)
Beta-xylosidase [Carbohydrate transport and metabolism]
Statistics
?
PSSM-Id: 226038
Aligned: 14 rows
Threshold Bit Score: 437.644
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
15614441   1 MKRTTMYRL-FIGFLLLAIMIPTASLAQSGdqk--eaPSFTEASVHDPSVIKVEdTFYVFGShLAAAKTEDLRNWTQIAT 77  Bacillus halodurans
16079933   6 TWKRFLHFSsAALAAGLIFTSAAPAEAAFWgasnellHDPTMIKEGSSWYALGT-GLTEERG-LRVLKSSDAKNWTVQKS 83  Bacillus subtilis
16078821   1 ------------------MKITNPVLKGFN-------PDPSICRAGEDYYIAVS-TFEWFPG-VQIHHSKDLVNWHLVAH 53  Bacillus subtilis
1176997    1 MFN-RLFRVcFLAALIMAFTLPNSVYAQK--------PIFKEVSVHDPSIIETNgTFYVFGShLASAKSNDLMQWQQLTT 71  Bacillus subtilis
15896693   1 -------------------MIKNPILRGFN-------PDPSICRADTDYYIATS-TFEWFPG-VQIHHSKDLVNWHLVAH 52  Clostridium acetobu...
15004817  22 AVAAKSFLAkAYTSDLGNGTYQNPVMYADY-------PDNSVIKVGSTYYMACS-SINYMPG-LPILKSQDLVNWEICSY 92  Clostridium acetobu...
16125066  41 GPTWTTGIEgQRKADLGDGTFLNPILTGDR-------PDPSILKDGADYYMTHS-SFDAYPG-LLIWHSRDLVNWTPVTT 111 Caulobacter crescen...
16127034  15 SNFVYEGSDpSDAIKAGPGQYRNPVVQGFY-------PDPSVTRAGKDFYLVNS-TFAWFPG-LPVFHSTDLVHWEQIGN 85  Caulobacter crescen...
15673487   1 -----------------MSLIQNPILPGFN-------ADPSIIRVEDTYYIANS-TFEWFPG-VRLHESKDLEHWSLLPS 54  Lactococcus lactis ...
15965670   1 ----------------MTATIRNPILPGFN-------PDPSICRVGEDYYIATS-TFEWYPG-VQIHHSRDLVNWRLVRR 55  Sinorhizobium meliloti
15614441  78 hvh------egnPLIPNVFVELAEAFewANSNTLWAADVIqLEDGRFYMYYnacqGDAPRSAlgvavaddieGPYENLGV 151 Bacillus halodurans
16079933  84 --------------IFTTPLSWWSNYvpNYGQNQWAPDIQ-YYNGKYWLYY-----SVSSFG----------SN-TSAIG 132 Bacillus subtilis
16078821  54 ------------PLQRVSQLDMKGN---PNSGGVWAPCLS-YSDGKFWLIY----TDVKVVD----------GAWKDCHN 103 Bacillus subtilis
1176997   72 svs------ndnPLIPNVYEELKETFewAQSDTLWAADVTqLADGKYYMYYnacrGDSPRSAmgvavadnieGPYKNKGI 145 Bacillus subtilis
15896693  53 ------------PLNRTSLLDMKGN---PNSGGIWAPDLS-YHDGKFWLIY----TDVKVTD----------GMWKDCHN 102 Clostridium acetobu...
15004817  93 afdridtgmsgiDKTHADAYNLVGGEn-VYSKGCWAPSLK-YHNGTFYATF----ASLDLGK-----------------T 149 Clostridium acetobu...
16125066 112 --------------------TLKTN-----VGSIWAPELC-KHKGRYYIYL-----PAKFPG-------------NN-TS 146 Caulobacter crescen...
16127034  86 ------------AIDRPGMLDFKRLG---LSRAVFAPAIQ-AHQGMFYILN----TCVDCGG-----------------N 128 Caulobacter crescen...
15673487  55 ------------PLSTTTLLDMRGN---SASGGIWAPDLS-YADGKFWLVY----TDVKVVN----------GAFKDMTN 104 Lactococcus lactis ...
15965670  56 ------------PLERASQLDMRGN---PDSCGVWAPCLS-YCDGLFWLVY----TDVKRLD----------GNFKDAHN 105 Sinorhizobium meliloti
15614441 152 FLKSgmwgEESPDGTIYDANVHPN--------AIDPHVFFDEE---GKLWMVYGSYSGG--------------IFILEMD 206 Bacillus halodurans
16079933 133 LASS----TSISSGGWKDEGLVIRstssnnynAIDPELTFDKD---DNPWLAFGSFWSG---------------IKLTKL 190 Bacillus subtilis
16078821 104 YLVT----CETINGDWSEPIKLNSs-------GFDASLFHDTD---GKKYLLNMLWDHRidrh-------sfgGIVIQEY 162 Bacillus subtilis
1176997  146 FLKSgmegTSS-DGTPYDATKHPN--------VVDPHTSFDKD---GKLWMVYGSYSGG--------------IFILEMN 199 Bacillus subtilis
15896693 103 YLTT----CESVDGVWSDPITLNGs-------GFDASLFHDND---GKKYLVNMYWDQRtynh-------nfyGIVLQEY 161 Clostridium acetobu...
15004817 150 FVCTk--tGPMGFGGWTFTAISGIg------yAHDADLFFDTD---GRVYLINGGCNVT--------------ELTPDCK 204 Clostridium acetobu...
16125066 147 YVIW----ADKIEGPWSEPIDLKLp------rYIDPGHIVDEA---GERWLFLSGGDRIkl-----------aPDGLSTV 202 Caulobacter crescen...
16127034 129 YLIT----AKDPKGPWSDPVWLPKv------gGIDPSIFFDDEdggGRVWIVNNDGPPGppey------pghrALWIHEY 192 Caulobacter crescen...
15673487 105 YLTT----ATDIKGPWTDPIKLNGl-------GFDASLFHDKD---GRKYLVQQTWDHReykh-------pfdGITLTEF 163 Lactococcus lactis ...
15965670 106 YIVT----AEAVEATWSDPVYVNSs-------GFDPSLFHDDD---GRKWFLNMQWNHRsesfagspkspafdGILLQEW 171 Sinorhizobium meliloti
15614441 207 PDTGFPLPGQGYGTHLMGGN----HSRIEAPyiHYDKETEYYYLYVTFGGLd--STGGYNMRVARSKQPDGP-YVDGEGH 279 Bacillus halodurans
16079933 191 DKSTMKPTGSLYSIAARPNN----GGALEAP--TLTYQNGYYYLMVSFDKCcdgVNSTYKIAYGRSKSITGP-YLDKSGK 263 Bacillus subtilis
16078821 163 SDKEQKLIGK-PKVIFEGTD----RKLTEAP--HLYHIGNYYYLLTAEGG----TRYEHAATIARSANIEGP-YEVHPDN 230 Bacillus subtilis
1176997  200 PKTGFPLPGQGYGKKLLGGN----HSRIEGPyvLYNPDTQYYYLYLSYGGLd--ATGGYNIRVARSKKPDGP-YYDAEGN 272 Bacillus subtilis
15896693 162 SDKEKKLIGK-AKIIYKGTD----IKYTEGP--HIYHIGDYYYLFTAEGG----TTYEHSETVARSKNIDGP-YEIDPEY 229 Clostridium acetobu...
15004817 205 SVKYGGINQK----IFDGGP------SHDGN--RIFKKNGYYYILSTPIKGn--GAYQRIEKAWRSKSLTGP---YEQTI 267 Clostridium acetobu...
16125066 203 GKPEHVYDPWRYPDDWDVEG-----FSPEGP--KLMRRGEYFYMITAVGGTa-gPPTGHMVIAARAKSLAGP-WENHPRN 273 Caulobacter crescen...
16127034 193 DPKTQTTVGPATLLLDKGVDpatkPIWPEGP--HILKKDGWYYLTAAEGG----TAEGHSQVVLRSKSVTGP-YVPYTNN 265 Caulobacter crescen...
15673487 164 DMTTMKLQPKKAKTIYNGTN----VKLVEGP--HLYQINDYYYLFAAQGG----TVFTHQEVVARSKTLDTLsFETEPGD 233 Lactococcus lactis ...
15965670 172 DERTRKLVGP-VKNIFAGSP----LGLVEGP--HLFKRDGWYYLTVAEGG----TGYDHAVGMARSRTIDGP-YEMHPNV 239 Sinorhizobium meliloti
15614441 280 LMSEVRGAPGT---LFDDASIEPYGVKQM-GNFLFKRELGERGTGYvsp---ghNSVYYDDEVDKIFLFFHT-RFPERGE 351 Bacillus halodurans
16079933 264 SMLE---------------GGGTILDSGN-DQWKGPGG----------------QDIVNGNILVRHAYDANDnGIPSFSS 311 Bacillus subtilis
16078821 231 PILTSWHDPGN---PLQKCGHASIVQTHT-DEWYLAHLTGRPIHPDddsifqqrGYCPLGRETAIQKLYWKD-EWPYVVG 305 Bacillus subtilis
1176997  273 PMLDVRGKGGT---FFDDRSIEPYGVKLM-GSYTFETE-NEKGTGYvsp---ghNSAYYDEKTGRSYLIFHT-RFPGRGE 343 Bacillus subtilis
15896693 230 PLLTSWHDPRN---SLQKCGHASLVHTHT-DEWYLAHLVGRPLPVGnqpvleqrGYCPLGRETSIQRIEWVD-NWPRVVG 304 Clostridium acetobu...
15004817 268 ILD----DGAN---------HQVCVVDDGsYNWAMLFE----------------DKGAVGRIPKLAPVTWVN-NWPMIGV 317 Clostridium acetobu...
16125066 274 PLVRTTDNAEK----WWSRGHATLVEGPTpGDWWTVYH-GYEN-----------GYYTLGRQTLLAPVTWTAdGWFDIGG 337 Caulobacter crescen...
16127034 266 PILTQRDLPRDrplPITSAGHADIVDTPD-GKWWATFLAVRPYGD---------DLYNTGRETFLLPVEWKD-GWPVILE 334 Caulobacter crescen...
15673487 234 PFITNFDTPDN---YIQKQGHGGLVSTPK-GEWYYASLCARPWNHKnesstdprGWSSLGRETSIQKVEWDEeGWPRIVG 309 Lactococcus lactis ...
15965670 240 HLITSKDHPEA---ALQRAGHGQYVETPD-GQAYHTHLCGRPLPPQ--------RRCTLGRETALQKCVWREdGWLYLEN 307 Sinorhizobium meliloti
15614441 352 AHEIRVHQMFMNRKGWPVIAPYRYT--GESLEKVKAKEVIGDYQWINHGKEISAEIKESVTVRLEKNHKVLGDVTGKWKK 429 Bacillus halodurans
16079933 312 MI------------------------------------------------------------------------------ 313 Bacillus subtilis
16078821 306 GKE-GSLEVDAPS-IPETIFEATYP--EVDEFEDSTLNINFQTLRIPFTNELGSLTQAPNHLRLFGHESLTSTFTQAFVA 381 Bacillus subtilis
1176997  344 EHEVRVHQLFMNKDGWPVAAPYRYA--GETLKEVKQKDITGTYKLIQHGKDISADIKQTINIQLNKNHTISGEMTGTWRK 421 Bacillus subtilis
15896693 305 GKQ-GSVNVEAPK-IPEVKWEKTYD--EKDNFDSDKLNINFQSLRIPLTENIASLKAKKGNLRLYGKESLTSTFTQAFIA 380 Clostridium acetobu...
15004817 318 NGSATVPNIYNKP-AAGNGIKSPGT--DDDFTSQGYVLSQWQWNHNPDNS-KWTTSERPGWMRLKTSYSKDFLQARNTLT 393 Clostridium acetobu...
16125066 338 GDL--SQPIKKPKGGKPGPHGMALS----DDFSTDKYGVQWNFFDPKPGE-QDRIKREGGVLTLKGAGEAPSTGSPLIFV 410 Caulobacter crescen...
16127034 335 NGKTIPYVADAPKLPALKTAPTSGPfkAAETFEGPELPMSWMTMRIPSKR-WWSVKDGTLSLEARKD-RVGGHEQPSIWA 412 Caulobacter crescen...
15673487 310 GHG-GTTFVEGPKDAIQTNAPAEHS--QKDDFASSTLDINWNTLRVPFTEKMGSVGN--GKLTLIGQGSLANNFDLSLIA 384 Lactococcus lactis ...
15965670 308 GGPVPGVTVPAPG-AAGTVAERVL---FETDFDEQVLPPEFQWLRTPVPERIFSLAARTGHLRLFGRESIGSWFEQALVA 383 Sinorhizobium meliloti
15614441 430 VGDYHVELQIDG-ETYYGVFLRQWDPVAER-EVMTFTALSEEGIAIWGSQLEEKT-DNEIVDAVYDDLTLEGTIIS---D 503 Bacillus halodurans
16079933     --------------------------------------------------------------------------------     Bacillus subtilis
16078821 382 RRWQSLHFEAETaVEFYPENFQQAAGLVNYyNTENWTALQVTHDEELGRILELTIcDNFSFSQPLN-NKIVIPREVk--Y 458 Bacillus subtilis
1176997  422 TGKNTADITLAG-KKYNGVFLRQWDSVREK-NVMTFSVLNTSGEAVWGSK------------------------------ 469 Bacillus subtilis
15896693 381 RRWQSFKFDASTsVSFSPDTFQQAAGLTCYyNTENWSTIQVTWNEDKGRVIDIVCcDNFHFDMPLKSNVIPIPKDVe--Y 458 Clostridium acetobu...
15004817 394 QRIQGPASSGWVkLDTTNIKPGQISGLSAFhSKYGYIGVRNDNGTKKLVQYNVTGsETAINLTNNI---VY--------- 461 Clostridium acetobu...
16125066 411 NGDQ--AYEIECeIEIEPETR---AGLILFyDRQLYCGLGFDAKNFVTHQYGIERgRPANPHGA-----------K---- 470 Caulobacter crescen...
16127034 413 RRQQHMNASVSTtVRFDPKADGDKAGLVAVqNDDFYWFVGLVQAGGKTLVRVEKRtSSKDPLDGAVVAEKPVSLKSg-qS 491 Caulobacter crescen...
15673487 385 RRWQAFYFDAEVkVKFDPFSYQQMAGLTNYyNDRHWSFVFITWNEVNGAVIEVAEnNRGNYTSYLKDNAIKIPDGTe--Y 462 Lactococcus lactis ...
15965670 384 RRQEHHSFRAEAvVDFAPDTYQQVAGLTHYyNRHKFHALGVTRHETLGRVLTILScPGDFPNGR-LTYPVGSGFAVpdgP 462 Sinorhizobium meliloti
15614441 504 VELPTRGMRQTTIAWSS-SHEEVLSSSGKVNRPEIGEDDVVVSltatIsKGSAERIKTFELVVPGQTEGGLVAHYPLNGT 582 Bacillus halodurans
16079933     --------------------------------------------------------------------------------     Bacillus subtilis
16078821 459 VYLRVNIEKDKYYYFYS-FNKEDWHKIDIALESKKLSDDYIRG----GgFFTGAFVGMQCQDTGGNHIPADFRYFRYKEK 533 Bacillus subtilis
1176997      --------------------------------------------------------------------------------     Bacillus subtilis
15896693 459 IHLKVEVRVETYQYSYS-FDGINWSKVPAIFESRKLSDDYVQG----GgFFTGAFVGINCIDITGNNKPADFDYFCYKEL 533 Clostridium acetobu...
15004817 462 LKVSTDCNAQTAKFYYS-YNGNSWTQLGSTLKMDFFYKLWFVG------YRFALFNYTTGSDTSG---YADFDYFKFSSF 531 Clostridium acetobu...
16125066 471 MLMRLRNNRHIVSFHTSgDGGKTWKRFDRGMEVSGYHHNVRGG-------FLMLKPGIYAAGKGS----ARFRGFKYRAL 539 Caulobacter crescen...
16127034 492 LDLKIAARGGALDFAYA-TAPGQWQTLKADADGTTLSTKVAGG-------FVGTMLGVYAHGVEE--------------- 548 Caulobacter crescen...
15673487 463 VWFRTKVRKESYSYEYS-FDGKKFIEIPVVLDAAVLSDDYVLQt--yGgFFTGAFVGLAAVDYSGYDRVAEFYNFDYKEL 539 Lactococcus lactis ...
15965670 463 VQLAMEVRDNDLQFFWRgAAQAEWLTIGPVLDAGVISDEGGRGe---HgSFTGAFAGIFAFDISGCATPADFDRFRYQAL 539 Sinorhizobium meliloti
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap