GEO DataSets

(Submitter supplied) This work was primarily focused on removing the main bottleneck for isobutanol production which is the toxicity of isobutanol towards its host and the major reason for its low-level production. Recently, there have been many reports where people have tried various strategies including continuous in-situ product removal from the bioreactor which led to a significant increase in the final product titers. more...

Organism:

Lactococcus cremoris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24381

4 Samples

Download data: TXT

(Submitter supplied) Transcriptome analysis of Lactococcus lactis cultures comparing control non-induced and induced with acetaldehyde

Organism:

Lactococcus cremoris; Lactococcus lactis

Type:

Expression profiling by array

Platform:

GPL28321

6 Samples

Download data: GPR, XLSX

(Submitter supplied) Transcriptome analysis of Lactococcus lactis cultures comparing control non-induced and induced with diacetyl

Organism:

Lactococcus cremoris; Lactococcus lactis

Type:

Expression profiling by array

Platform:

GPL28321

6 Samples

Download data: GPR, XLSX

(Submitter supplied) ArgR and the sRNA from its 3’UTR, ArgX, both regulate the arc operon by influencing transcription and RNA stability/translation respectively

Organism:

Lactococcus cremoris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24073

16 Samples

Download data: GFF, RPKM, TXT

(Submitter supplied) Target identification of the cold stress induced sRNA CisR in Lactococcus lactis by CisR overexpression and MAPS technology

Organism:

Lactococcus cremoris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24073

8 Samples

Download data: GFF, RPKM, TXT

(Submitter supplied) Transcriptomes of L. lactis MG1363ΔcelBΔptcCΔ0963 containing either an IS905 or a gfp integrated into llmg_1239 (pseudo_39) were compared to that of MG1363 with a Pcel (llmg_0186)up-mutation An integration of IS905 into a gene coding for a transcriptional repressor led to activation of the repressed gene cluster coding for a plant sugar utilization pathway. The strain is further characterized using DNA MicroArrays.

Organism:

Lactococcus cremoris

Type:

Expression profiling by array

Platform:

GPL23996

16 Samples

Download data: TXT

(Submitter supplied) Lactococcus lactis is one of the most important lactic acid bacterium used in the dairy industry. Activation of natural DNA transformation in this species would greatly improve the selection of novel strains with desired industrial traits. Here, we investigate the activation of natural transformation in L. lactis ssp. cremoris KW2, a strain of plant origin whose genome encodes the master competence regulator ComX and the complete set of essential late gene products required for natural transformation under its potential control. more...

Organism:

Lactococcus cremoris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22400

2 Samples

Download data: XLSX

(Submitter supplied) L. lactis MG1363 was evolved in 4 fermentors in glucose-containing chemically defined medium (CDMPC) for 309 generations at a dilution rate of 0.5h-1 Glycerol stocks made during the evolution experiment were revived in CDMPC and further characterized.

Organism:

Lactococcus cremoris; Lactococcus cremoris subsp. cremoris MG1363

Type:

Expression profiling by array

Platform:

GPL20601

4 Samples

Download data: TXT

(Submitter supplied) The goal was to determine the effect of agmatine on the trancriptional profile of L. lactis CECT 8666 strain. For that we compared the expression profile of L. lactis CECT 8666 cells grown in culture medium supplemented with 20 mM agmatine with the expression profile of L. lactis CECT 8666 cells grown in culture medium without agmatine.

Organism:

Lactococcus cremoris; Lactococcus cremoris subsp. cremoris GE214

Type:

Expression profiling by array

Platform:

GPL18969

5 Samples

Download data: GPR

(Submitter supplied) L. lactis NIAI712 carries five different plasmids, including an 8.7-kb plasmid designated pAG6. In this study, genome-wide expression profiles of the pAG6-cured variant was compared to the wild-type strain.

Organism:

Lactococcus cremoris; Lactococcus lactis

Type:

Expression profiling by array

Platform:

GPL17320

2 Samples

Download data: CALLS, PAIR

(Submitter supplied) Pangenome arrays contain DNA oligomers targeting several sequenced reference genomes from the same species. In microbiology these can be employed to investigate the often high genetic variability within a species by comparative genome hybridization (CGH). The biological interpretation of pangenome CGH data depends on the ability to compare strains at a functional level, particularly by comparing the presence or absence of orthologous genes. more...

Organism:

Lactococcus lactis; Lactococcus cremoris; Lactococcus lactis subsp. lactis; Lactococcus lactis subsp. hordniae

Type:

Genome variation profiling by genome tiling array

Platform:

GPL7231

39 Samples

Download data

(Submitter supplied) MG1363 and ncRNA design Jan2015 Arrays of this design have barcodes that begin with 16072274 or 2572274. Please note that the LLMGnc_* IDs are the non-coding RNAs published in van der Meulen et al., 2016; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829306/ Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Lactococcus cremoris

2 Series

12 Samples

Download data

(Submitter supplied) MG1363 and ncRNA design Jan2015 Arrays of this design have barcodes that begin with 16072274 or 2572274. Please note that the LLMGnc_* IDs are the non-coding RNAs published in van der Meulen et al., 2016; https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829306/ Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Lactococcus cremoris

1 Series

16 Samples

Download data: TXT