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Items: 1 to 20 of 22

1.

Expression analysis of Sphingomonas paucimobilis sp. EPA505 during biodegradation kinetics of various PAHs and detection of gene in a contaminated soil S3

(Submitter supplied) Studying eight enzymes involved in the degradation of polycyclic aromatic hydrocarbons from the model strain Sphingomonas paucimobilis sp. EPA505 using a designed microarray of 8,048 probes. During the biodegradation kinetics with phenanthrene, fluoranthene or a mix of both pollutants, we identified the targeted set of genes induced by these pollutants, compared to basal expression detected with glucose. more...
Organism:
uncultured organism; Sphingomonas paucimobilis
Type:
Expression profiling by array
Platform:
GPL10343
17 Samples
Download data: PAIR
Series
Accession:
GSE21402
ID:
200021402

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

Assessing the importance of target type for oligonucleotide microarray experiments

(Submitter supplied) In order to assess the effect on signal variability of the type of target used for oligonucleotide microarray experiments, we hybridized double and single stranded DNA of three genes on a Nimblegen High Density microarray. This slide carries specific probes (two lengths: 30 and 50 nucleotides, for a total of 7456 probes) targeting every region of selected genes.
Organism:
Methylosinus trichosporium; Sphingomonas paucimobilis; Dehalococcoides mccartyi VS; Methylosinus trichosporium OB3b
Type:
Other; Expression profiling by high throughput sequencing
Platform:
GPL10729
6 Samples
Download data: PAIR
Series
Accession:
GSE23168
ID:
200023168

Analyze with GEO2R

3.

Nimblegen_Custom_PAH_array_V01

(Submitter supplied) The Platform data table reflects a condensed representation of the expression array's replicates (SEQ_ID) features. The .ndf file is linked below as a supplementary file. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Organism:
Sphingomonas paucimobilis
1 Series
17 Samples
Download data: NDF
Platform
Accession:
GPL10343
ID:
100010343

4.

Nimblegen Custom 7.5K thermodynamic array V01

(Submitter supplied) Synthetic genes. The Platform data table reflects a condensed representation of the expression array's replicates (SEQ ID) features. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Organism:
Methylosinus trichosporium; Sphingomonas paucimobilis; Dehalococcoides mccartyi VS
1 Series
6 Samples
Download data: NDF
Platform
Accession:
GPL10729
ID:
100010729

5.

EPA505_PHE/FLA_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534830
ID:
300534830

6.

EPA505_PHE/FLA_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534829
ID:
300534829

7.

EPA505_PHE/FLA_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534828
ID:
300534828

8.

EPA505_PHE/FLA_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534827
ID:
300534827

9.

EPA505_Fluoranthene_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534826
ID:
300534826

10.

EPA505_Fluoranthene_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534825
ID:
300534825

11.

EPA505_Fluoranthene_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534824
ID:
300534824

12.

EPA505_Fluoranthene_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534823
ID:
300534823

13.

EPA505_Phenanthrene_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534822
ID:
300534822

14.

EPA505_Phenanthrene_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534821
ID:
300534821

15.

EPA505_Phenanthrene_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534820
ID:
300534820

16.

EPA505_Phenanthrene_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534819
ID:
300534819

17.

EPA505_Glucose_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534818
ID:
300534818

18.

EPA505_Glucose_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534817
ID:
300534817

19.

EPA505_Glucose_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534816
ID:
300534816

20.

EPA505_Glucose_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534815
ID:
300534815

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