GEO DataSets

(Submitter supplied) Whole genome DNA microarray designed for the probiotic L. johnsonii strain NCC533 was used for comparative genomic hybridization (CGH) of L. johnsonii ATCC 33200T, L. johnsonii BL261, L. gasseri ATCC 33323T and L. iatae BL263 (CECT 7394T). In these experiments, the fluorescence ratio distributions obtained with L. iatae and L. gasseri showed characteristic inter-species profiles. The percentage of conserved L. more...

Organism:

Lactobacillus johnsonii; Lactobacillus gasseri; Lactobacillus iatae

Type:

Genome variation profiling by array

Platform:

GPL10375

8 Samples

Download data: TXT

(Submitter supplied) Full title: Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes: Implications for its niche adaptation, pathogenesis, and evolution Listeria monocytogenes is a foodborne bacterial pathogen well known for adaptability to diverse environmental and host niches, and a high fatality rate among infected, immuno-compromised individuals. Three genetic lineages have been identified within this species. more...

Organism:

Listeria monocytogenes; Listeria monocytogenes EGD-e; Listeria monocytogenes serotype 4b str. F2365; Listeria monocytogenes serotype 1/2a str. F6854; Listeria monocytogenes FSL J1-175; Listeria monocytogenes FSL R2-503; Listeria monocytogenes J2818; Listeria monocytogenes serotype 4b str. H7858; Listeria monocytogenes FSL J1-208; Listeria monocytogenes FSL N3-165; Listeria monocytogenes LO28; Listeria monocytogenes FSL J1-194; Listeria monocytogenes FSL J2-003; Listeria monocytogenes FSL J2-064; Listeria monocytogenes FSL N1-017; Listeria monocytogenes F6900; Listeria monocytogenes 10403S; Listeria monocytogenes FSL F2-515; Listeria monocytogenes FSL J2-071; Listeria monocytogenes J0161; Listeria monocytogenes HPB2262; Listeria monocytogenes FSL F2-208

Type:

Genome variation profiling by genome tiling array

Platform:

GPL8942

18 Samples

Download data: PAIR, TXT

(Submitter supplied) Commensal (symbiont) bacteria form communities in various regions of the bodies of vertebrates. Phylogenetic analysis of gut communities is advanced, but the relationships, especially at the trophic level, between commensals that share gut habitats of monogastric animals have not been investigated to any extent. Lactobacillus reuteri strain 100-23 and Lactobacillus johnsonii strain 100-33 cohabit in the forestomach of mice. more...

Organism:

Limosilactobacillus reuteri subsp. rodentium

Type:

Expression profiling by array

Platform:

GPL10986

4 Samples

Download data: TXT

(Submitter supplied) Whole-transcriptome gene-expression analyses are commonly performed in species that have a sequenced genome and for which microarrays are commercially available. To do such analyses in species with no or limited genome data, i.e. non-model organisms, necessary transcriptomics resources, i.e. an annotated transcriptome and a validated gene-expression microarray, must first be developed. The aim of the present study was to establish an advanced approach for developing transcriptomics resources for non-model organisms by combining next-generation sequencing (NGS) and microarray technology. more...

Organism:

Anopheles gambiae; Chironomus riparius

Type:

Genome variation profiling by array

Platform:

GPL18083

2 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Staphylococcus aureus; Danio rerio

Type:

Genome variation profiling by genome tiling array; Genome variation profiling by array

Platforms:

GPL17764 GPL17935

45 Samples

Download data: FTR

(Submitter supplied) Genomes and transcriptomes of non-model organisms can be analyzed using next-generation sequencing technologies, but de-novo sequencing and annotating a full eukaryotic genome is still challenging. So, -omics experimentation with non-model organisms requires a suite of technologies to obtain reliable results in a cost-effective manner. Here, a novel method for microarray-based genome analysis is presented which is especially suitable for non-model organisms. more...

Organism:

Danio rerio

Type:

Genome variation profiling by array

Platform:

GPL17935

12 Samples

Download data: FTR

(Submitter supplied) Genomes and transcriptomes of non-model organisms can be analyzed using next-generation sequencing technologies, but de-novo sequencing and annotating a full eukaryotic genome is still challenging. So, -omics experimentation with non-model organisms requires a suite of technologies to obtain reliable results in a cost-effective manner. Here, a novel method for microarray-based genome analysis is presented which is especially suitable for non-model organisms. more...

Organism:

Staphylococcus aureus

Type:

Genome variation profiling by genome tiling array

Platform:

GPL17764

33 Samples

Download data: FTR