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Items: 17

1.

Expression analysis of Sphingomonas paucimobilis sp. EPA505 during biodegradation kinetics of various PAHs and detection of gene in a contaminated soil S3

(Submitter supplied) Studying eight enzymes involved in the degradation of polycyclic aromatic hydrocarbons from the model strain Sphingomonas paucimobilis sp. EPA505 using a designed microarray of 8,048 probes. During the biodegradation kinetics with phenanthrene, fluoranthene or a mix of both pollutants, we identified the targeted set of genes induced by these pollutants, compared to basal expression detected with glucose. more...
Organism:
Sphingomonas paucimobilis; uncultured organism
Type:
Expression profiling by array
Platform:
GPL10343
17 Samples
Download data: PAIR
Series
Accession:
GSE21402
ID:
200021402

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2.

EPA505_PHE/FLA_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534830
ID:
300534830

3.

EPA505_PHE/FLA_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534829
ID:
300534829

4.

EPA505_PHE/FLA_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534828
ID:
300534828

5.

EPA505_PHE/FLA_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with PHE/FLA as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534827
ID:
300534827

6.

EPA505_Fluoranthene_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534826
ID:
300534826

7.

EPA505_Fluoranthene_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534825
ID:
300534825

8.

EPA505_Fluoranthene_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534824
ID:
300534824

9.

EPA505_Fluoranthene_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Fluoranthene as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534823
ID:
300534823

10.

EPA505_Phenanthrene_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534822
ID:
300534822

11.

EPA505_Phenanthrene_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534821
ID:
300534821

12.

EPA505_Phenanthrene_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534820
ID:
300534820

13.

EPA505_Phenanthrene_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Phenanthrene as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534819
ID:
300534819

14.

EPA505_Glucose_21h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 21h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534818
ID:
300534818

15.

EPA505_Glucose_10h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 10h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534817
ID:
300534817

16.

EPA505_Glucose_6h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 6h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534816
ID:
300534816

17.

EPA505_Glucose_3h

Organism:
Sphingomonas paucimobilis
Source name:
Strain EPA505 with Glucose as sole carbon and energy source. total RNA extracted after 3h of culture
Platform:
GPL10343
Series:
GSE21402
Download data: PAIR
Sample
Accession:
GSM534815
ID:
300534815

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