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GEO DataSets

Functional Genomics Studies

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Items: 9

Select item 2001968451.

Development of ONT-cappable-seq to unravel the transcriptional landscape of Pseudomonas phages

(Submitter supplied) We developed ONT-cappable-seq, a specialized long-read RNA sequencing technique that allows end-to-end sequencing of primary prokaryotic transcripts using the Nanopore sequencing platform. We applied ONT-cappable-seq to study the transcriptional landscape of Pseudomonas aeruginosa phage LUZ7, leading to a comprehensive genome-wide map of viral transcription start sites, terminators and complex operon structures that fine-regulate gene expression. more...

Organism:: Pseudomonas aeruginosa

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL31946
8 Samples

Download data: NARROWPEAK

Series

Accession:: GSE196845

ID:: 200196845

PubMed Full text in PMC Similar studies

Select item 3059030072.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903007

ID:: 305903007

SRA Run Selector

Select item 3059030063.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903006

ID:: 305903006

SRA Run Selector

Select item 3059030054.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903005

ID:: 305903005

SRA Run Selector

Select item 3059030045.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903004

ID:: 305903004

SRA Run Selector

Select item 3059030036.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903003

ID:: 305903003

SRA Run Selector

Select item 3059030027.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903002

ID:: 305903002

SRA Run Selector

Select item 3059030018.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903001

ID:: 305903001

SRA Run Selector

Select item 3059030009.

Organism:: Pseudomonas aeruginosa

Source name:: Pseudomonas aeruginosa

Platform:: GPL31946
Series:: GSE196845

Download data: NARROWPEAK

Sample

Accession:: GSM5903000

ID:: 305903000

SRA Run Selector

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txid287[orgn] AND "strain US449"[All Fields] (9)
GEO DataSets
txid287[orgn] AND "strain AR 460"[All Fields] (2)
SRA
Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa

biosample
txid287[orgn] AND "strain CFBR Pa44"[All Fields] (1)
BioSample
Bacteria 16S ribosomal RNA gene, partial sequence.
Bacteria 16S ribosomal RNA gene, partial sequence.
PopSet: 1005392049

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