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GEO DataSets

Functional Genomics Studies

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Select item 2000216271.

Lactobacillus johnsonii NCC comparative genomics with L. iatae

(Submitter supplied) Whole genome DNA microarray designed for the probiotic L. johnsonii strain NCC533 was used for comparative genomic hybridization (CGH) of L. johnsonii ATCC 33200T, L. johnsonii BL261, L. gasseri ATCC 33323T and L. iatae BL263 (CECT 7394T). In these experiments, the fluorescence ratio distributions obtained with L. iatae and L. gasseri showed characteristic inter-species profiles. The percentage of conserved L. more...

Organism:: Lactobacillus gasseri; Lactobacillus iatae; Lactobacillus johnsonii

Type:: Genome variation profiling by array

Platform:: GPL10375
8 Samples

Download data: TXT

Series

Accession:: GSE21627

ID:: 200021627

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000092362.

In vitro expression profiles of Lactobacillus johnsonii NCC533 in MRS

(Submitter supplied) Work with pathogens like Vibrio cholerae has shown major differences between gene expression in bacteria grown in vitro and in vivo. To explore this subject for commensals, we investigated the transcription of the Lactobacillus johnsonii NCC533 genome during in vitro using the microarray technology. In broth growth, 537, 626 and 277 of the 1756 tested genes were expressed during exponential, “adaptation” (early stationary phase) and stationary phase, respectively. more...

Organism:: Lactobacillus johnsonii; Lactobacillus johnsonii NCC 533

Type:: Expression profiling by array

Platform:: GPL5958
18 Samples

Download data: TXT

Series

Accession:: GSE9236

ID:: 200009236

PubMed Full text in PMC Similar studies

Select item 3005398223.

ATCC33200T_004_2

Organism:: Lactobacillus johnsonii

Source name:: ATCC33200T (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539822

ID:: 300539822

Select item 3005398214.

Organism:: Lactobacillus johnsonii

Source name:: NCC533 (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539821

ID:: 300539821

Select item 3005398205.

ATCC33323T_005_2

Organism:: Lactobacillus johnsonii; Lactobacillus gasseri

Source name:: ATCC33323T (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539820

ID:: 300539820

Select item 3005398196.

Organism:: Lactobacillus johnsonii; Lactobacillus iatae

Source name:: BL263 (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539819

ID:: 300539819

Select item 3005398187.

Organism:: Lactobacillus johnsonii

Source name:: NCC533 (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539818

ID:: 300539818

Select item 3005398178.

ATCC33200T_003_1

Organism:: Lactobacillus johnsonii

Source name:: ATCC33200T (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539817

ID:: 300539817

Select item 3005398169.

Organism:: Lactobacillus johnsonii; Lactobacillus iatae

Source name:: BL263 (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539816

ID:: 300539816

Select item 30053981510.

Organism:: Lactobacillus johnsonii

Source name:: BL261 (channel 1) NCC533 (channel 2)

Platform:: GPL10375
Series:: GSE21627

Download data: TXT

Sample

Accession:: GSM539815

ID:: 300539815

Select item 30023469111.

stationary phase phase biological replicate 3 technical replicate 2

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 3 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234691

ID:: 300234691

Select item 30023469012.

stationary phase phase biological replicate 3 technical replicate 1

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 3 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234690

ID:: 300234690

Select item 30023468913.

stationary phase phase biological replicate 2 technical replicate 2

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 2 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234689

ID:: 300234689

Select item 30023468814.

stationary phase phase biological replicate 2 technical replicate 1

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 2 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234688

ID:: 300234688

Select item 30023468715.

stationary phase phase biological replicate 1 technical replicate 2

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 1 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234687

ID:: 300234687

Select item 30023468616.

stationary phase phase biological replicate 1 technical replicate 1

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 1 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234686

ID:: 300234686

Select item 30023468517.

adaptation phase phase biological replicate 3 technical replicate 2

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 3 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234685

ID:: 300234685

Select item 30023468418.

adaptation phase phase biological replicate 3 technical replicate 1

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 3 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234684

ID:: 300234684

Select item 30023468319.

adaptation phase phase biological replicate 2 technical replicate 2

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 2 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234683

ID:: 300234683

Select item 30023468220.

adaptation phase phase biological replicate 2 technical replicate 1

Organism:: Lactobacillus johnsonii

Source name:: Total RNA bacterial growth in sixfors fermentor 2 (channel 1) Total RNA bacterial growth reference (exponential phase) (channel 2)

Platform:: GPL5958
Series:: GSE9236

Download data: TXT

Sample

Accession:: GSM234682

ID:: 300234682

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txid33959[orgn] AND "strain NCC533"[All Fields] (28)
GEO DataSets
Lactobacillus johnsonii strain PI5 16S ribosomal RNA gene, partial sequence
Lactobacillus johnsonii strain PI5 16S ribosomal RNA gene, partial sequence
gi|924878735|gb|KT626422.1|

Nucleotide
txid33959[orgn] AND "strain ATCC 33200"[All Fields] (2)
BioSample
MAG: Lactobacillus johnsonii isolate SUG689, whole genome shotgun sequencing pro...
MAG: Lactobacillus johnsonii isolate SUG689, whole genome shotgun sequencing project
gi|2214682344|gb|JALFHQ000000000.1| Q010000000

Nucleotide
Lactobacillaceae 16S ribosomal RNA gene, partial sequence.
Lactobacillaceae 16S ribosomal RNA gene, partial sequence.
PopSet: 1200712071

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