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smpB SsrA-binding protein SmpB [ Lactiplantibacillus pentosus ]

Gene ID: 49393131, updated on 8-Feb-2024

Summary

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Gene symbol
smpB
Gene description
SsrA-binding protein SmpB
Locus tag
LP314_RS03960
Gene type
protein coding
Organism
Lactiplantibacillus pentosus (strain: DSM 20314, culture-collection: DSM:20314, type-material: type strain of Lactobacillus pentosus)
Lineage
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus
Old locus tag
LP314_03960
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Genomic context

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NZ_CP032757.1Genomic Context describing neighboring genes Neighboring gene alpha/beta fold hydrolase Neighboring gene ribonuclease R Neighboring gene BspA family leucine-rich repeat surface protein Neighboring gene amino acid ABC transporter substrate-binding protein/permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP032757.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Hong SJ, et al. Mol Microbiol, 2005 Jul. PMID 15978085, Free PMC Article
  2. Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation. Metzinger L, et al. Nucleic Acids Res, 2005. PMID 15860775, Free PMC Article
  3. Comparative 3-D modeling of tmRNA. Burks J, et al. BMC Mol Biol, 2005 Jun 15. PMID 15958166, Free PMC Article
  4. A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation. Sundermeier TR, et al. Proc Natl Acad Sci U S A, 2005 Feb 15. PMID 15699355, Free PMC Article
  5. Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Ivanova N, et al. Nucleic Acids Res, 2005. PMID 15972795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
SsrA-binding protein SmpB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP032757.1 Reference assembly

    Range
    841425..841895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_003637880.1 MULTISPECIES: SsrA-binding protein SmpB [Lactiplantibacillus]

    See identical proteins and their annotated locations for WP_003637880.1

    UniProtKB/TrEMBL
    A0A241RMC0, A0A837RE64, F6IZJ7, G0M2S0, I9L3D6
    Conserved Domains (1) summary
    pfam01668
    Location:13 → 155
    SmpB; SmpB protein
Nucleotide Protein
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