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LA14_RS06325 GIY-YIG nuclease family protein [ Lactobacillus acidophilus La-14 ]

Gene ID: 56942860, updated on 15-Apr-2023

Summary

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Gene symbol
LA14_RS06325
Gene description
GIY-YIG nuclease family protein
Locus tag
LA14_RS06325
Gene type
protein coding
Organism
Lactobacillus acidophilus La-14 (strain: La-14, culture-collection: ATCC:SD-5212)
Lineage
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus
Old locus tag
LA14_1274
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Genomic context

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Sequence:
NC_021181.2 (1249539..1250570, complement)

NC_021181.2Genomic Context describing neighboring genes Neighboring gene translation elongation factor Ts Neighboring gene 30S ribosomal protein S2 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase Neighboring gene cyclopropane-fatty-acyl-phospholipid synthase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021181.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI. Van Roey P, et al. Nat Struct Biol, 2002 Nov. PMID 12379841
  2. Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: coincidence of computational and molecular findings. Kowalski JC, et al. Nucleic Acids Res, 1999 May 15. PMID 10219084, Free PMC Article
  3. Conserved domains in DNA repair proteins and evolution of repair systems. Aravind L, et al. Nucleic Acids Res, 1999 Mar 1. PMID 9973609, Free PMC Article
  4. Identification of a family of bacteriophage T4 genes encoding proteins similar to those present in group I introns of fungi and phage. Sharma M, et al. Proc Natl Acad Sci U S A, 1992 Jul 15. PMID 1631169, Free PMC Article
  5. Complete Genome Sequence of Probiotic Strain Lactobacillus acidophilus La-14. Stahl B, et al. Genome Announc, 2013 Jun 20. PMID 23788546, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
GIY-YIG nuclease family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_021181.2 Reference assembly

    Range
    1249539..1250570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_003547839.1 GIY-YIG nuclease family protein [Lactobacillus acidophilus]

    See identical proteins and their annotated locations for WP_003547839.1

    UniProtKB/TrEMBL
    A0A809KBG2, Q5FJM2
    Conserved Domains (2) summary
    cd10456
    Location:261 → 326
    GIY-YIG_UPF0213; The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1
    cl17173
    Location:3 → 244
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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