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CR251_RS05055 YbaK/EbsC family protein [ Propionibacterium freudenreichii ]

Gene ID: 61222084, updated on 3-Apr-2024

Summary

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Gene symbol
CR251_RS05055
Gene description
YbaK/EbsC family protein
Locus tag
CR251_RS05055
Gene type
protein coding
Organism
Propionibacterium freudenreichii (isolate: PFRJS14)
Lineage
Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionibacterium
Old locus tag
PFR_JS14_1010
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Genomic context

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Location:
chromosome: I

I - NZ_LT593929.1Genomic Context describing neighboring genes Neighboring gene 1-deoxy-D-xylulose-5-phosphate synthase Neighboring gene HRDC domain-containing protein Neighboring gene DUF3000 domain-containing protein Neighboring gene PPK2 family polyphosphate kinase Neighboring gene peptide-methionine (R)-S-oxide reductase MsrB Neighboring gene IS481-like element ISPfr17 family transposase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_LT593929.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substrate-mediated fidelity mechanism ensures accurate decoding of proline codons. So BR, et al. J Biol Chem, 2011 Sep 9. PMID 21768119, Free PMC Article
  2. Structures of two bacterial prolyl-tRNA synthetases with and without a cis-editing domain. Crepin T, et al. Structure, 2006 Oct. PMID 17027500
  3. The bacterial YbaK protein is a Cys-tRNAPro and Cys-tRNA Cys deacylase. Ruan B, et al. J Biol Chem, 2005 Jul 8. PMID 15886196
  4. Trans-editing of mischarged tRNAs. Ahel I, et al. Proc Natl Acad Sci U S A, 2003 Dec 23. PMID 14663147, Free PMC Article
  5. Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase.YbaK.tRNA ternary complex. An S, et al. J Biol Chem, 2005 Oct 14. PMID 16087664

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
YbaK/EbsC family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_LT593929.1 Reference assembly

    Range
    1156899..1157423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013161143.1 YbaK/EbsC family protein [Propionibacterium freudenreichii]

    See identical proteins and their annotated locations for WP_013161143.1

    UniProtKB/TrEMBL
    A0A0B7NYW0, D7GE08
    Conserved Domains (1) summary
    cl00022
    Location:30 → 167
    YbaK_like; YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze ...
Nucleotide Protein
Heading Accession and Version