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smpB SsrA-binding protein SmpB [ Propionibacterium freudenreichii ]

Gene ID: 61222352, updated on 12-Feb-2024

Summary

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Gene symbol
smpB
Gene description
SsrA-binding protein SmpB
Locus tag
CR251_RS06415
Gene type
protein coding
Organism
Propionibacterium freudenreichii (isolate: PFRJS14)
Lineage
Bacteria; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionibacterium
Old locus tag
PFR_JS14_1272
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Genomic context

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Location:
chromosome: I

I - NZ_LT593929.1Genomic Context describing neighboring genes Neighboring gene DUF1707 and DUF4870 domain-containing protein Neighboring gene miscRNA Neighboring gene DUF2207 domain-containing protein Neighboring gene M23 family metallopeptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_LT593929.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Hong SJ, et al. Mol Microbiol, 2005 Jul. PMID 15978085, Free PMC Article
  2. Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation. Metzinger L, et al. Nucleic Acids Res, 2005. PMID 15860775, Free PMC Article
  3. Comparative 3-D modeling of tmRNA. Burks J, et al. BMC Mol Biol, 2005 Jun 15. PMID 15958166, Free PMC Article
  4. A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation. Sundermeier TR, et al. Proc Natl Acad Sci U S A, 2005 Feb 15. PMID 15699355, Free PMC Article
  5. Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Ivanova N, et al. Nucleic Acids Res, 2005. PMID 15972795, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
SsrA-binding protein SmpB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_LT593929.1 Reference assembly

    Range
    1460607..1461089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013160870.1 SsrA-binding protein SmpB [Propionibacterium freudenreichii]

    See identical proteins and their annotated locations for WP_013160870.1

    UniProtKB/TrEMBL
    A0A068VR26, A0A0A8T877, D7GD77
    Conserved Domains (1) summary
    pfam01668
    Location:10 → 151
    SmpB; SmpB protein
Nucleotide Protein
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