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smpB SsrA-binding protein SmpB [ Burkholderia vietnamiensis ]

Gene ID: 69528738, updated on 3-Apr-2024

Summary

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Gene symbol
smpB
Gene description
SsrA-binding protein SmpB
Locus tag
WJ01_RS28375
Gene type
protein coding
Organism
Burkholderia vietnamiensis (strain: FL-2-3-10-S3-D0)
Lineage
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex
Old locus tag
WJ01_28810
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Genomic context

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NZ_LOWL01000059.1Genomic Context describing neighboring genes Neighboring gene RnfH family protein Neighboring gene type II toxin-antitoxin system RatA family toxin Neighboring gene SPFH domain-containing protein Neighboring gene NfeD family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_LOWL01000059.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Hong SJ, et al. Mol Microbiol, 2005 Jul. PMID 15978085, Free PMC Article
  2. Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation. Metzinger L, et al. Nucleic Acids Res, 2005. PMID 15860775, Free PMC Article
  3. Comparative 3-D modeling of tmRNA. Burks J, et al. BMC Mol Biol, 2005 Jun 15. PMID 15958166, Free PMC Article
  4. A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation. Sundermeier TR, et al. Proc Natl Acad Sci U S A, 2005 Feb 15. PMID 15699355, Free PMC Article
  5. Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Ivanova N, et al. Nucleic Acids Res, 2005. PMID 15972795, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
SsrA-binding protein SmpB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_LOWL01000059.1 Reference assembly

    Range
    163300..163746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_006478511.1 MULTISPECIES: SsrA-binding protein SmpB [Burkholderia]

    See identical proteins and their annotated locations for WP_006478511.1

    UniProtKB/Swiss-Prot
    A0K8C3, A4JF55, Q1BHG2
    UniProtKB/TrEMBL
    A0A071MP95, A0A084DA68, A0A095DW88, A0A124Q3E6, A0A1B4NSS6, A0A1I0HJ86, A0A1K1NME4, A0A228HXZ9, A0A2U9SJG2, A0A318IRA4, A0A364GMJ2, A0A365QZF1, A0A3N7ZTG3, A0A495YMT8, A0A4S5D8A8, A0A6P2S464, A0A806VHX2, A0A8E2N3J6, A0AA89F2G2, A2VXE9, B1JUD0, B4EC78, I2DNB7, U2HDM8
    Conserved Domains (1) summary
    PRK05422
    Location:1 → 146
    smpB; SsrA-binding protein SmpB
Nucleotide Protein
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