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SSUBM407_RS07920 polysaccharide deacetylase family protein [ Streptococcus suis BM407 ]

Gene ID: 8154268, updated on 6-Oct-2023

Summary

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Gene symbol
SSUBM407_RS07920
Gene description
polysaccharide deacetylase family protein
Locus tag
SSUBM407_RS07920
Gene type
protein coding
Organism
Streptococcus suis BM407 (strain: BM407)
Lineage
Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Old locus tag
SSUBM407_1524
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Genomic context

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Sequence:
NC_012926.1 (1600416..1601813, complement)

NC_012926.1Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uridine kinase Neighboring gene DEAD/DEAH box helicase Neighboring gene VOC family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012926.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of screening assays and discovery of initial inhibitors of pneumococcal peptidoglycan deacetylase PgdA. Bui NK, et al. Biochem Pharmacol, 2011 Jul 1. PMID 21501597
  2. Evidence for a general role for high-affinity non-catalytic cellulose binding domains in microbial plant cell wall hydrolases. Millward-Sadler SJ, et al. Mol Microbiol, 1994 Jan. PMID 8170399
  3. Cloning and expression of two chitin deacetylase genes of Saccharomyces cerevisiae. Mishra C, et al. Yeast, 1997 Mar 30. PMID 9133736
  4. Molecular basis of symbiosis between Rhizobium and legumes. Freiberg C, et al. Nature, 1997 May 22. PMID 9163424
  5. Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. Holden MT, et al. PLoS One, 2009 Jul 15. PMID 19603075, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. We have established a virtual high-throughput screening and a new enzyme assay to search for compounds inhibiting PgdA.
    Title: Development of screening assays and discovery of initial inhibitors of pneumococcal peptidoglycan deacetylase PgdA.
Submit: New GeneRIF Correction

General protein information

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Preferred Names
polysaccharide deacetylase family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012926.1 Reference assembly

    Range
    1600416..1601813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012775287.1 polysaccharide deacetylase family protein [Streptococcus suis]

    See identical proteins and their annotated locations for WP_012775287.1

    UniProtKB/TrEMBL
    A0A0H3MX89, A0A2K1SJG8, D5AJA8
    Conserved Domains (2) summary
    pfam18627
    Location:33 → 251
    PgdA_N; Peptidoglycan GlcNAc deacetylase N-terminal domain
    cl15692
    Location:265 → 441
    CE4_SF; Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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