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Items: 1 to 20 of 1316

1.
Restriction modification systems in archaea: A panoramic outlook
Pallavi Gulati, Ashish Singh, Sandeep Patra, Shreyas Bhat, Anil Verma
Heliyon. 2024 Apr 30; 10(8): e27382. Published online 2024 Mar 5. doi: 10.1016/j.heliyon.2024.e27382
PMCID:
PMC11033074
ArticlePDF–1.2M
2.
tRNA engineering strategies for genetic code expansion
YouJin Kim, Suho Cho, Joo-Chan Kim, Hee-Sung Park
Front Genet. 2024; 15: 1373250. Published online 2024 Mar 7. doi: 10.3389/fgene.2024.1373250
PMCID:
PMC10954879
ArticlePDF–2.8M
3.
Protein lipidation in health and disease: molecular basis, physiological function and pathological implication
Yuan Yuan, Peiyuan Li, Jianghui Li, Qiu Zhao, Ying Chang, Xingxing He
Signal Transduct Target Ther. 2024; 9: 60. Published online 2024 Mar 15. doi: 10.1038/s41392-024-01759-7
PMCID:
PMC10940682
ArticlePDF–7.1M
4.
Combining metabolic flux analysis with proteomics to shed light on the metabolic flexibility: the case of Desulfovibrio vulgaris Hildenborough
Xavier Marbehan, Magali Roger, Frantz Fournier, Pascale Infossi, Emmanuel Guedon, Louis Delecourt, Régine Lebrun, Marie-Thérèse Giudici-Orticoni, Stéphane Delaunay
Front Microbiol. 2024; 15: 1336360. Published online 2024 Feb 23. doi: 10.3389/fmicb.2024.1336360
PMCID:
PMC10920352
ArticlePDF–4.8M
5.
Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea
Kira S. Makarova, Changyi Zhang, Yuri I. Wolf, Svetlana Karamycheva, Rachel J. Whitaker, Eugene V. Koonin
mBio. 2024 Feb; 15(2): e03092-23. Published online 2024 Jan 8. doi: 10.1128/mbio.03092-23
PMCID:
PMC10865827
ArticlePDF–2.4M
6.
Unraveling the multiplicity of geranylgeranyl reductases in Archaea: potential roles in saturation of terpenoids
Alka Rao, Arnold J. M. Driessen
Extremophiles. 2024; 28(1): 14. Published online 2024 Jan 27. doi: 10.1007/s00792-023-01330-2
PMCID:
PMC10821996
ArticlePDF–8.2M
7.
Clustered Regularly Interspaced Short Palindromic Repeat/CRISPR-Associated Protein and Its Utility All at Sea: Status, Challenges, and Prospects
Jiashun Li, Shuaishuai Wu, Kaidian Zhang, Xueqiong Sun, Wenwen Lin, Cong Wang, Senjie Lin
Microorganisms. 2024 Jan; 12(1): 118. Published online 2024 Jan 6. doi: 10.3390/microorganisms12010118
PMCID:
PMC10820777
ArticlePDF–1.8M
8.
Unveiling a CAAX Protease‐Like Protein Involved in Didemnin Drug Maturation and Secretion
Xiaolin Zou, Zhen Hui, Robert A. Shepherd, Shuaiqiang Zhao, Yanfei Wu, Zhuanglin Shen, Cuiping Pang, Shipeng Zhou, Zehai Yu, Jiahai Zhou, Bradly S. Moore, Laura M. Sanchez, Xiaoyu Tang
Adv Sci (Weinh) 2024 Jan; 11(4): 2306044. Published online 2023 Nov 30. doi: 10.1002/advs.202306044
PMCID:
PMC10811503
ArticlePDF–2.7M
9.
In silico discovery of the myxosortases that process MYXO-CTERM and three novel prokaryotic C-terminal protein-sorting signals that share invariant Cys residues
Daniel H. Haft
J Bacteriol. 2024 Jan; 206(1): e00173-23. Published online 2023 Dec 12. doi: 10.1128/jb.00173-23
PMCID:
PMC10810001
ArticlePDF–1.2M
10.
Essential genes identification model based on sequence feature map and graph convolutional neural network
Wenxing Hu, Mengshan Li, Haiyang Xiao, Lixin Guan
BMC Genomics. 2024; 25: 47. Published online 2024 Jan 10. doi: 10.1186/s12864-024-09958-w
PMCID:
PMC10777564
ArticlePDF–4.6M
11.
CRISPR/Cas12a toolbox for genome editing in Methanosarcina acetivorans
Ping Zhu, Tejas Somvanshi, Jichen Bao, Silvan Scheller
Front Microbiol. 2023; 14: 1235616. Published online 2023 Dec 12. doi: 10.3389/fmicb.2023.1235616
PMCID:
PMC10750270
ArticlePDF–1.3M
12.
Biochemical and genetic studies define the functions of methylthiotransferases in methanogenic and methanotrophic archaea
Kaleb Boswinkle, Thuc-Anh Dinh, Kylie D. Allen
Front Microbiol. 2023; 14: 1304671. Published online 2023 Nov 23. doi: 10.3389/fmicb.2023.1304671
PMCID:
PMC10702137
ArticlePDF–2.4M
13.
The transcriptional regulator EarA and intergenic terminator sequences modulate archaellation in Pyrococcus furiosus
Richard Stöckl, Laura Nißl, Robert Reichelt, Reinhard Rachel, Dina Grohmann, Felix Grünberger
Front Microbiol. 2023; 14: 1241399. Published online 2023 Nov 9. doi: 10.3389/fmicb.2023.1241399
PMCID:
PMC10665913
ArticlePDF–4.3M
14.
Antiviral type III CRISPR signalling via conjugation of ATP and SAM
Haotian Chi, Ville Hoikkala, Sabine Grüschow, Shirley Graham, Sally Shirran, Malcolm F. White
Nature. 2023; 622(7984): 826–833. Published online 2023 Oct 18. doi: 10.1038/s41586-023-06620-5
PMCID:
PMC10600005
ArticlePDF–32M
15.
An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter
Isabella Casini, Tim McCubbin, Sofia Esquivel-Elizondo, Guillermo G. Luque, Daria Evseeva, Christian Fink, Sebastian Beblawy, Nicholas D. Youngblut, Ludmilla Aristilde, Daniel H. Huson, Andreas Dräger, Ruth E. Ley, Esteban Marcellin, Largus T. Angenent, Bastian Molitor
iScience. 2023 Oct 20; 26(10): 108016. Published online 2023 Sep 22. doi: 10.1016/j.isci.2023.108016
PMCID:
PMC10579436
ArticlePDF–4.7M
16.
Making the connections: physical and electric interactions in biohybrid photosynthetic systems
Ying Yang, Lu-Ning Liu, Haining Tian, Andrew I. Cooper, Reiner Sebastian Sprick
Energy Environ Sci. 2023 Oct 11; 16(10): 4305–4319. Published online 2023 Aug 16. doi: 10.1039/d3ee01265d
PMCID:
PMC10566253
Article
17.
EquiPNAS: improved protein-nucleic acid binding site prediction using protein-language-model-informed equivariant deep graph neural networks
Rahmatullah Roche, Bernard Moussad, Md Hossain Shuvo, Sumit Tarafder, Debswapna Bhattacharya
Version 1. bioRxiv. Preprint. 2023 Sep 16. doi: 10.1101/2023.09.14.557719
Published in:
Nucleic Acids Res. 2024 Mar 21; 52(5): e27.
PMCID:
PMC10515942
ArticlePDF–2.4M
18.
The minimal SUF system is not required for Fe–S cluster biogenesis in the methanogenic archaeon Methanosarcina acetivorans
Jasleen Saini, Thomas M. Deere, Daniel J. Lessner
Sci Rep. 2023; 13: 15120. Published online 2023 Sep 13. doi: 10.1038/s41598-023-42400-x
PMCID:
PMC10500019
ArticlePDF–1.8M
19.
Model Organisms To Study Methanogenesis, a Uniquely Archaeal Metabolism
Kyle C. Costa, William B. Whitman
J Bacteriol. 2023 Aug; 205(8): e00115-23. Published online 2023 Jul 17. doi: 10.1128/jb.00115-23
PMCID:
PMC10448791
ArticlePDF–1.3M
20.
Metal-Containing Formate Dehydrogenases, a Personal View
Silke Leimkühler
Molecules. 2023 Jul; 28(14): 5338. Published online 2023 Jul 11. doi: 10.3390/molecules28145338
PMCID:
PMC10385643
ArticlePDF–2.6M

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