Salarchaeum japonicum gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea isolated from commercial salt

Int J Syst Evol Microbiol. 2011 Sep;61(Pt 9):2266-2270. doi: 10.1099/ijs.0.025064-0. Epub 2010 Oct 15.

Abstract

Strain YSM-79(T) was isolated from commercial salt made from seawater in Yonaguni island, Okinawa, Japan. The strain is an aerobic, Gram-negative, chemo-organotrophic and extremely halophilic archaeon. Cells are short rods that lyse in distilled water. Growth occurs at 1.5-5.3 M NaCl (optimum 2.5-3.0 M), pH 5.0-8.8 (optimum pH 5.2-6.3) and 20-55 °C (optimum 40 °C). Mg²⁺ is required for growth, with maximum growth at 200-300 mM Mg²⁺. Polar lipid analysis revealed the presence of phosphatidylglycerol, phosphatidylglycerophosphate methyl ester, sulfated diglycosyl diether-1 and five unidentified glycolipids. The G+C content of the DNA was 64 mol%. On the basis of 16S rRNA gene sequence analysis, strain YSM-79(T) was determined to be a member of the family Halobacteriaceae, with the closest related genus being Halobacterium (94 % sequence identity). In addition, the rpoB' gene sequence of strain YSM-79(T) had <88 % sequence similarity to those of other members of the family Halobacteriaceae. The results of phenotypic, chemotaxonomic and phylogenetic analysis suggested that strain YSM-79(T) should be placed in a new genus, Salarchaeum gen. nov., as a representative of Salarchaeum japonicum sp. nov. The type strain is YSM-79(T) ( = JCM 16327(T) = CECT 7563(T)).

MeSH terms

  • Aerobiosis
  • Base Composition
  • Cluster Analysis
  • DNA, Archaeal / chemistry
  • DNA, Archaeal / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • DNA-Directed RNA Polymerases / genetics
  • Food Microbiology*
  • Genes, rRNA
  • Halobacteriaceae / classification*
  • Halobacteriaceae / genetics
  • Halobacteriaceae / isolation & purification*
  • Halobacteriaceae / physiology
  • Hydrogen-Ion Concentration
  • Japan
  • Magnesium / metabolism
  • Molecular Sequence Data
  • Phospholipids / analysis
  • Phylogeny
  • RNA, Archaeal / genetics
  • RNA, Ribosomal, 16S / genetics
  • Salts*
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Sodium Chloride / metabolism
  • Temperature

Substances

  • DNA, Archaeal
  • DNA, Ribosomal
  • Phospholipids
  • RNA, Archaeal
  • RNA, Ribosomal, 16S
  • Salts
  • Sodium Chloride
  • DNA-Directed RNA Polymerases
  • RNA polymerase beta subunit
  • Magnesium

Associated data

  • GENBANK/AB454051