Pyrodictium delaneyi sp. nov., a hyperthermophilic autotrophic archaeon that reduces Fe(III) oxide and nitrate

Int J Syst Evol Microbiol. 2016 Sep;66(9):3372-3376. doi: 10.1099/ijsem.0.001201. Epub 2016 Jun 3.

Abstract

A hyperthermophilic, autotrophic iron and nitrate reducer, strain Su06T, was isolated from an active deep-sea hydrothermal vent chimney on the Endeavour Segment in the north-eastern Pacific Ocean. It was obligately anaerobic, hydrogenotrophic and reduced Fe(III) oxide to magnetite and NO3- to N2. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the strain was more than 97 % similar to other species of the genera Pyrodictium and Hyperthermus. Therefore, overall genome relatedness index analyses were performed to establish whether strain Su06T represents a novel species. For each analysis, strain Su06T was most similar to Pyrodictium occultum PL-19T. Relative to this strain, the average nucleotide identity score for strain Su06T was 72 %, the genome-to-genome direct comparison score was 13-19 % and the species identification score at the protein level was 89 %. For each analysis, strain Su06T was below the species delineation cutoff. Based on its whole genome sequence and its unique phenotypic characteristics, strain Su06T is suggested to represent a novel species of the genus Pyrodictium, for which the name Pyrodictium delaneyi is proposed. The type strain is Su06T (=DSM 28599T=ATCC BAA-2559T).

MeSH terms

  • Base Composition
  • DNA, Archaeal / genetics
  • Ferric Compounds / metabolism*
  • Ferrosoferric Oxide / metabolism
  • Hydrothermal Vents / microbiology*
  • Iron / metabolism
  • Nitrates / metabolism
  • Pacific Ocean
  • Phylogeny*
  • Pyrodictiaceae / classification*
  • Pyrodictiaceae / genetics
  • Pyrodictiaceae / isolation & purification
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology
  • Sequence Analysis, DNA

Substances

  • DNA, Archaeal
  • Ferric Compounds
  • Nitrates
  • RNA, Ribosomal, 16S
  • ferric oxide
  • Iron
  • Ferrosoferric Oxide