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SRX030880: Illumina whole genome shotgun sequencing of genomic DNA paired-end libraries 'Solexa-21509' and 'Solexa-20774' containing 24 pooled Streptococcus pyogenes MGAS15012 samples
25 ILLUMINA (Illumina Genome Analyzer II) runs: 35.5M spots, 5.1G bases, 2Gb downloads

UUID: 8c51ff5b-1347-48d9-a0b5-edf10a5e38b1
Design: Provide sequencing coverage to use in comparative SNP analysis.
Submitted by: Broad Institute (BI)
Study: Streptococcus pyogenes
show Abstracthide Abstract
GAS (group A Streptococcus) is a Gram-positive bacterium that causes several diseases in humans, including pharyngitis and/or tonsillitis, skin infections (impetigo, erysipelis, and other forms of pyoderma), acute rheumatic fever (ARF), scarlet fever (SF), poststreptococcal glomerulonephritis, a toxic-shock-like syndrome, and necrotizing fasciitis (NF). The overall goal of this project is to provide unique understanding, at the nucleotide level, of the molecular genetic events contributing to epidemics caused by a bacterial pathogen, including antibiotic-resistant strains. The project will exploit the availability of a unique sample of 362 serotype M3 strains of group A Streptococcus recovered during an ongoing study of invasive infections in Ontario, Canada.
Library:
Name: Solexa-20774&Solexa-21509
Instrument: Illumina Genome Analyzer II
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward barcode
Group tagBasecalls
tagged_117ACCAACTG
tagged_190AGCAATTC
tagged_236AGTTGCTT
tagged_289ATTATGTT
tagged_332CACATCCT
tagged_34AACTTGAC
tagged_357CAGGAGCC
tagged_367CATAGCGA
tagged_375CATGCTTA
tagged_393CCAGTTAG
tagged_422CCTACCAT
tagged_504CTACCAGG
tagged_52AAGGATGT
tagged_629GCACACGA
tagged_630GCACATCT
tagged_726GGTCCAGA
tagged_741GTATAACA
tagged_800TACTTAGC
tagged_869TCGGAATG
tagged_880TCTGGCGA
tagged_908TGCTCGAC
tagged_927TGTCGGAT
tagged_954TTCGCTGA
tagged_960TTGAGCCT
77  reverse

Experiment attributes: (show all 6 attributes...) (hide...)
analysis_type: WGSWithRef
gssr_ids: 35887.1 35889.1 35891.1 35893.1 35903.1 35905.1 35 (show full text...)(hide...)
35887.1 35889.1 35891.1 35893.1 35903.1 35905.1 35907.1 35909.1 35951.1 35953.1 35959.1 35961.1 35971.1 35973.1 35975.1 35977.1 35987.1 35989.1 35991.1 35993.1 36003.1 36005.1 36007.1 36009.1
lsids: BROAD:SEQUENCING_SAMPLE:35887.1 BROAD:SEQUENCING_S (show full text...)(hide...)
BROAD:SEQUENCING_SAMPLE:35887.1 BROAD:SEQUENCING_SAMPLE:35889.1 BROAD:SEQUENCING_SAMPLE:35891.1 BROAD:SEQUENCING_SAMPLE:35893.1 BROAD:SEQUENCING_SAMPLE:35903.1 BROAD:SEQUENCING_SAMPLE:35905.1 BROAD:SEQUENCING_SAMPLE:35907.1 BROAD:SEQUENCING_SAMPLE:35909.1 BROAD:SEQUENCING_SAMPLE:35951.1 BROAD:SEQUENCING_SAMPLE:35953.1 BROAD:SEQUENCING_SAMPLE:35959.1 BROAD:SEQUENCING_SAMPLE:35961.1 BROAD:SEQUENCING_SAMPLE:35971.1 BROAD:SEQUENCING_SAMPLE:35973.1 BROAD:SEQUENCING_SAMPLE:35975.1 BROAD:SEQUENCING_SAMPLE:35977.1 BROAD:SEQUENCING_SAMPLE:35987.1 BROAD:SEQUENCING_SAMPLE:35989.1 BROAD:SEQUENCING_SAMPLE:35991.1 BROAD:SEQUENCING_SAMPLE:35993.1 BROAD:SEQUENCING_SAMPLE:36003.1 BROAD:SEQUENCING_SAMPLE:36005.1 BROAD:SEQUENCING_SAMPLE:36007.1 BROAD:SEQUENCING_SAMPLE:36009.1
material_type: Genomic DNA
projects: G2947 G2949 G2951 G2953 G2963 G2965 G2967 G2969 G2 (show full text...)(hide...)
G2947 G2949 G2951 G2953 G2963 G2965 G2967 G2969 G2977 G2991 G2993 G2995 G2997 G2999 G3001 G3015 G3019 G3021 G3023 G3025 G3027 G3029 G3039 G3041
work_request: 21008
Pipeline: show...hide...
NameStepProgramVersion
2010-03-10 18:33:32.0Rig Software2.6.25
base caller2010-03-10 18:33:19.0GAPipeline1.6.0a16
Runs: 25 runs, 35.5M spots, 5.1G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR0642332,263,840326M120.8Mb2010-11-18
SRR0642341,354,058195M77.7Mb2010-11-12
SRR0642351,311,421188.8M75.1Mb2010-11-12
SRR0642361,347,954194.1M77.3Mb2010-11-13
SRR0642371,493,721215.1M85.5Mb2010-11-13
SRR0642381,407,505202.7M80.9Mb2010-11-13
SRR0642391,398,036201.3M80.1Mb2010-11-13
SRR0642401,402,098201.9M81.2Mb2010-11-13
SRR0642411,369,145197.2M78.8Mb2010-11-13
SRR0642421,268,057182.6M72.9Mb2010-11-13
SRR0642431,326,436191M76.4Mb2010-11-13
SRR0642441,462,055210.5M84.1Mb2010-11-13
SRR0642451,537,137221.3M88.5Mb2010-11-13
SRR0642461,365,058196.6M78.1Mb2010-11-13
SRR0642471,443,755207.9M84.2Mb2010-11-13
There are 10 omitted runs. See all runs in Run Selector.

#Member# of Spots# of Bases
1SRS0248872.3M326M
2SRS107480 : tagged_34_AACTTGAC1.4M201.3M
3SRS107481 : tagged_332_CACATCCT1.4M202.7M
4SRS107482 : tagged_504_CTACCAGG1.5M221.3M
5SRS107483 : tagged_869_TCGGAATG1.4M203.2M
6SRS107484 : tagged_52_AAGGATGT1.4M196.6M
7SRS107485 : tagged_357_CAGGAGCC1.4M201.9M
8SRS107486 : tagged_629_GCACACGA1.4M207.9M
9SRS107487 : tagged_880_TCTGGCGA1.4M195.7M
10SRS107488 : tagged_960_TTGAGCCT1.4M199.9M
11SRS107489 : tagged_289_ATTATGTT1.5M215.1M
12SRS107490 : tagged_422_CCTACCAT1.5M210.5M
13SRS107491 : tagged_800_TACTTAGC1.4M204.8M
14SRS107492 : tagged_393_CCAGTTAG1.3M191M
15SRS107493 : tagged_741_GTATAACA1.4M204.8M
16SRS107494 : tagged_954_TTCGCTGA1.3M183.2M
17SRS107495 : tagged_236_AGTTGCTT1.3M194.1M
18SRS107496 : tagged_190_AGCAATTC1.3M188.8M
19SRS107497 : tagged_375_CATGCTTA1.3M182.6M
20SRS107498 : tagged_726_GGTCCAGA1.3M189.8M
21SRS107499 : tagged_927_TGTCGGAT1.5M215.4M
22SRS107500 : tagged_630_GCACATCT1.3M191.9M
23SRS107501 : tagged_908_TGCTCGAC1.3M190.4M
24SRS107502 : tagged_117_ACCAACTG1.4M195M
25SRS107503 : tagged_367_CATAGCGA1.4M197.2M
26 : defaultn/an/a

ID:
37590

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