U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

ERX3806390: NextSeq 500 paired end sequencing; Raw reads: Burkholderia_vietnamiensis_T3
1 ILLUMINA (NextSeq 500) run: 2.9M spots, 787.2M bases, 323.6Mb downloads

Design: unspecified
Submitted by: CARDIFF SCHOOL OF BIOSCIENCES
Study: Genomic alterations in Burkholderia vietnamiensis strain G4 exposed to sub-lethal concentrations of ethylzingerone identified by whole-genome sequencing analysis.
show Abstracthide Abstract
The propensity of Burkholderia bacteria to develop adaptive resistance to the proprietary preservative ethylzingerone [4-(3-ethoxy-4-hydroxyphenyl) butan-2-one)] was evaluated using Burkholderia vietnamiensis strain G4. The model organism was progressively sub-cultured in increasing concentrations of ethylzingerone starting at up to eight-fold lower than the minimum inhibitory concentration (>0.03125% w/v active). Genomic alterations in three ethylzingerone-adapted derivatives of B.vietnamiensis strain G4 were identified using whole-genome sequencing and analysis with a rapid haploid variant calling and core genome alignment tool (SNIPPY).
Sample: Whole-genome sequencing of Burkholderia vietnamiensis strain G4 following exposure to sub-lethal concentrations of ethylzingerone
SAMEA6359100 • ERS4125350 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 2.9M spots, 787.2M bases, 323.6Mb
Run# of Spots# of BasesSizePublished
ERR38045002,856,386787.2M323.6Mb2020-01-14

ID:
9879813

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...