single-cell # 66 of Methanococcus EPD 09 of UE3 co-culture with Desul... - SRA

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SRX8585094: single-cell # 66 of Methanococcus EPD 09 of UE3 co-culture with Desulfovibrio at 1000 generation
1 ILLUMINA (NextSeq 500) run: 522,343 spots, 78.6M bases, 28Mb downloads

Design: Variant identification through sequencing of Genomic DNA collected from sorted single-cell # 66 of Methanococcus maripaludis from EPD 09 of UE3 co-culture with Desulfovibrio vulgaris after evolving for 1000 generation

Submitted by: Institute for Systems Biology

Study: Distribution of mutations in evolved syntrophic co-cultures of sulfate reducing bacteria Desulfovibrio vulgaris Hildenborough and methanogenic archaea Methanococcus maripaludis S2

PRJNA248017 • SRP042058 • All experiments • All runs

show Abstracthide Abstract

Synthetically established syntrophic cultures of Desulfovibrio vulgaris Hildenborough and Methanococcus maripaludis S2 were cultivated in two different evolution environments (shaking vs no-shaking) for 1000 generations. DNA samples were collected and subjected to whole genome sequencing to be able to identify variations accumulated during the evolution of syntrophy in both species.

Sample: Genomic DNA collected from sorted single-cell # 66 of Methanococcus maripaludis from EPD 09 of UE3 co-culture with Desulfovibrio vulgaris after evolving for 1000 generation

SAMN15315298 • SRS6876596 • All experiments • All runs

Organism: Methanococcus maripaludis S2

Library:

Name: single-cells-mmp-09-66

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC SINGLE CELL

Selection: PCR

Layout: PAIRED

Runs: 1 run, 522,343 spots, 78.6M bases, 28Mb

Run	# of Spots	# of Bases	Size	Published
SRR12056553	522,343	78.6M	28Mb	2020-06-19

ID:: 11160513

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