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SRX5024991: WGS of S.suis IMT40343
1 ILLUMINA (Illumina MiSeq) run: 1M spots, 489.2M bases, 271Mb downloads

Design: Illumina Nextera XT
Submitted by: Institute for Microbiology and Epizootics, Freie University Berlin
Study: Penicillin susceptibility of Streptococcus suis isolates collected in German pig farms within the VASIB project
show Abstracthide Abstract
The VASIB project included 30 piglet-producing German farms. Those were tested within a one-year period. Bronchoalveolar lavage fluid (BALFs) samples, of healthy or respiratory tract diseased piglets, served for cultivation of respiratory tract pathogens. Besides, BALFs of diseased piglets were collected, before and after antimicrobial treatment. Further, antimicrobial residues were measured in piglet environment as well as piglet plasma.The aim of the study was to determine phenotypic and genotypic antimicrobial resistances in respiratory tract pathogens, e.g. S. suis. Additional, possible gene transfer or special mutations that mediate antimicrobial resistances were examined. Resistances were observed under the aspect of antimicrobial selection pressure during therapy or environmental antimicrobial residues.
Sample:
SAMN10440286 • SRS4056579 • All experiments • All runs
Library:
Name: IMT40343
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 1M spots, 489.2M bases, 271Mb
Run# of Spots# of BasesSizePublished
SRR82056661,042,160489.2M271Mb2018-11-19

ID:
6778463

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