SRX9926936: Streptococcus suis Serotype7-donor
1 ILLUMINA (HiSeq X Ten) run: 5.7M spots, 1.7G bases, 665.7Mb downloads
Design: Quality trimming and adapter trimming were conducted using Cutadapt (https://github.com/marcelm/cutadapt/) via TrimGalore(https://github.com/FelixKrueger/TrimGalore). Mismatch correction of reads and assembly were carried out using SPAdes, and the assembly was polished using Pilon, with the aid of Unicycler. The completeness and contamination of the final draft genome sequence were assessed using CheckM.
Submitted by: National Institute of Animal Health
Study:
Streptococcus suis Genome sequencing and assemblyshow Abstracthide AbstractConfirmation of the mutation/insertion/deletion in genome by serotype switch in S. suis.
Sample:
Donor strain for serotype 7 switchingLibrary:
Name: MO690
Instrument: HiSeq X Ten
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs:
1 run, 5.7M spots, 1.7G bases, 665.7Mb