U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DRX447749: MinION sequencing of SAMD00599670
1 OXFORD_NANOPORE (MinION) run: 350,381 spots, 702.2M bases, 569.9Mb downloads

Submitted by: GIFU_U
Study: Genome Sequencing of Lactiplantibacillus plantarum in Japanese postfermented tea
show Abstracthide Abstract
Postfermented tea production, involving microbial fermentation, is limited to a few regions, such as China and Japan, with Japan's Shikoku region being particularly prominent. Lactiplantibacillus plantarum is known as the dominant species found in tea leaves after anaerobic fermentation of Awa-bancha in Miyoshi City, Tokushima, and Ishizuchi-kurocha in Ehime. Although a draft genome of L. plantarum from Japanese postfermented tea has been previously reported, its genetic diversity still requires exploration. In this study, we conducted whole-genome sequencing on four L. plantarum isolates from Japanese postfermented tea using a Nanopore sequencer and compared them with isolates from other sources to examine their genetic diversity. Our findings revealed that L. plantarum from Japanese postfermented tea exhibits several highly variable gene regions associated with sugar metabolism and transportation. However, we did not identify any source-specific genes or clustering within the accessory or core gene regions. This study indicates that L. plantarum possesses high genetic diversity, and the unique environment of Japanese postfermented tea does not appear to exert selective pressure on the growth of L. plantarum.
Sample: Lactiplantibacillus plantarum AWA2013
SAMD00599670 • DRS310155 • All experiments • All runs
Library:
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Construction protocol:
Runs: 1 run, 350,381 spots, 702.2M bases, 569.9Mb
Run# of Spots# of BasesSizePublished
DRR463491350,381702.2M569.9Mb2023-06-05

ID:
28021605

Supplemental Content

Search details

See more...

Recent activity