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SRX1635130: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.9M spots, 512.2M bases, 270.7Mb downloads

External Id: EXT00173083
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: California Department of Health - FDLB Micro
show Abstracthide Abstract
Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.
Sample:
SAMN04531987 • SRS1341196 • All experiments • All runs
Library:
Name: Campylobacter jejuni Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.
Spot descriptor:
forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.9M spots, 512.2M bases, 270.7Mb
Run# of Spots# of BasesSizePublished
SRR32293161,853,259512.2M270.7Mb2016-03-16

ID:
2338984

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