Whole genome shotgun sequencing of Campylobacter jejuni by Illumina M... - SRA

SRX1978314: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 665,320 spots, 239.5M bases, 123.8Mb downloads

External Id: EXT00197151

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: Campylobacter Genome sequencing and assembly

PRJNA271861 • SRP051933 • All experiments • All runs

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Whole genome sequencing of cultured Campylobacter jejuni as part of a joint Fera, Food Standards Agency, US Food and Drug Administration project.

Sample:

SAMN05441407 • SRS1585882 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: Campylobacter jejuni Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 665,320 spots, 239.5M bases, 123.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR3954081	665,320	239.5M	123.8Mb	2016-07-26

ID:: 2846640

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