Whole genome shotgun sequencing of Campylobacter jejuni by Illumina M... - SRA

SRX2003813: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 411,570 spots, 192.7M bases, 113.9Mb downloads

External Id: EXT00206284

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: Virginia - Division of Consolidated Laboratory Services

PRJNA323586 • SRP080844 • All experiments • All runs

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Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.

Sample:

SAMN05427536 • SRS1603429 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: Campylobacter jejuni Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 411,570 spots, 192.7M bases, 113.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR4003588	411,570	192.7M	113.9Mb	2016-08-05

ID:: 2879767

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