Whole genome shotgun sequencing of FSIS11706873 by Illumina MiSeq - SRA

SRX3636409: Whole genome shotgun sequencing of FSIS11706873 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 378,113 spots, 112.8M bases, 63.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: FSIS NARMS Campylobacter

PRJNA292668 • SRP063302 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.

Sample:

SAMN08447557 • SRS2902914 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: FSIS11706873 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS11706873.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 378,113 spots, 112.8M bases, 63.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR6659282	378,113	112.8M	63.1Mb	2018-01-31

ID:: 5034273

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