Whole genome shotgun sequencing of FSIS11808012 by Illumina MiSeq - SRA

SRX3776486: Whole genome shotgun sequencing of FSIS11808012 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 420,299 spots, 122.6M bases, 74.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: FSIS NARMS Campylobacter

PRJNA292668 • SRP063302 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.

Sample:

SAMN08663293 • SRS3030534 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: FSIS11808012 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS11808012.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 420,299 spots, 122.6M bases, 74.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR6819638	420,299	122.6M	74.5Mb	2018-03-08

ID:: 5206877

SRA

Sequence Read Archive

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