Whole genome shotgun sequencing of FSIS11814612 by Illumina MiSeq - SRA

SRX4937226: Whole genome shotgun sequencing of FSIS11814612 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 386M bases, 193.9Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: FSIS NARMS Campylobacter

PRJNA292668 • SRP063302 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.

Sample:

SAMN10292920 • SRS3981206 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: FSIS11814612 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS11814612.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 1.3M spots, 386M bases, 193.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR8110701	1,309,811	386M	193.9Mb	2018-10-25

ID:: 6639806

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Sequence Read Archive

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