Whole genome shotgun sequencing of FSIS12028214 by Illumina MiSeq - SRA

SRX8428823: Whole genome shotgun sequencing of FSIS12028214 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 582,663 spots, 172.5M bases, 93.3Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: FSIS NARMS Campylobacter

PRJNA292668 • SRP063302 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.

Sample:

SAMN15060945 • SRS6740224 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: FSIS12028214 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS12028214.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 582,663 spots, 172.5M bases, 93.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR11879333	582,663	172.5M	93.3Mb	2020-05-29

ID:: 10962526

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Sequence Read Archive

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