Whole genome shotgun sequencing of FSIS1606228 by Illumina MiSeq - SRA

SRX1688411: Whole genome shotgun sequencing of FSIS1606228 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 362,362 spots, 172.1M bases, 99.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: FSIS NARMS Campylobacter

PRJNA292668 • SRP063302 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.

Sample:

SAMN04625673 • SRS1382941 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: FSIS1606228 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS1606228.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 362,362 spots, 172.1M bases, 99.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR3350897	362,362	172.1M	99.4Mb	2016-04-08

ID:: 2418794

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity