Whole genome shotgun sequencing of FSIS1608343 by Illumina MiSeq - SRA

SRX2347683: Whole genome shotgun sequencing of FSIS1608343 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 700,723 spots, 175.7M bases, 94.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: USDA-FSIS: Isolated strains of Campylobacter spp. genome sequencing

PRJNA287430 • SRP059786 • All experiments • All runs

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Whole genome sequencing of Campylobacter isolates

Sample:

SAMN06015821 • SRS1797955 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: FSIS1608343 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS1608343.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 700,723 spots, 175.7M bases, 94.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR5019852	700,723	175.7M	94.1Mb	2016-11-15

ID:: 3424018

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